Os11g0248200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding protein Lupus La domain containing protein.
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Os11g0248200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding protein Lupus La domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.65 | 0.3 | 11.3 | -1.01 | 0.306 | -0.0958 | -0.279 | -2.45 | -0.185 | 10.7 | 18.74 | 9917 | -- | -- |
| 46.15 | 0.319 | 11.2 | -0.346 | 0.288 | 0.141 | -0.274 | -- | -0.00392 | 10.5 | 14.24 | 23244 | -- | -- |
| 40.93 | 0.298 | 11.3 | -1.01 | 0.309 | -0.0951 | -- | -2.43 | -0.183 | 11 | 18.67 | 10075 | -- | -- |
| 46.37 | 0.317 | 11.2 | -0.45 | 0.311 | 0.129 | -- | -- | -0.0407 | 11.2 | 13.8 | 21790 | -- | -- |
| 46.77 | 0.319 | 11.3 | -1.01 | -- | -0.121 | -- | -2.45 | -0.176 | -- | 18.85 | 9784 | -- | -- |
| 46.33 | 0.319 | 11.2 | -0.32 | 0.314 | -- | -0.22 | -- | 0.016 | 10.9 | -- | -- | -- | -- |
| 46.51 | 0.319 | 11.2 | -0.329 | 0.315 | -- | -- | -- | 0.0158 | 11.2 | -- | -- | -- | -- |
| 50.99 | 0.334 | 11.2 | -0.399 | -- | 0.345 | -- | -- | -0.0328 | -- | 13.8 | 21790 | -- | -- |
| 47.06 | 0.319 | 11.2 | -- | 0.307 | -0.237 | -- | -- | 0.134 | 11.4 | 21.9 | 47520 | -- | -- |
| 52.7 | 0.339 | 11.2 | -0.336 | -- | -- | -- | -- | 0.013 | -- | -- | -- | -- | -- |
| 49.35 | 0.329 | 11.2 | -- | 0.318 | -- | -- | -- | 0.0523 | 11.2 | -- | -- | -- | -- |
| 52.95 | 0.339 | 11.2 | -- | -- | -0.24 | -- | -- | 0.143 | -- | 23.88 | 47183 | -- | -- |
| 55.68 | 0.348 | 11.2 | -- | -- | -- | -- | -- | 0.0503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.20 | temperature | 20 | 30 | > th | dose independent | rect. | 21 | 8 |
| 5 | 39.88 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 9 |
| 6 | 39.89 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 11 | 40.12 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 22 | 40.31 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 6 |
| 23 | 40.33 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 6 |
| 30 | 40.36 | radiation | 10 | 720 | < th | dose independent | rect. | 15 | 10 |
| 42 | 40.44 | radiation | 10 | 720 | < th | dose independent | rect. | 15 | 8 |
| 49 | 40.48 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 51 | 40.49 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 54 | 40.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 56 | 40.50 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 64 | 40.51 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 74 | 40.55 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 81 | 40.56 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 94 | 40.59 | humidity | 80 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 95 | 40.61 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 98 | 40.62 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 107 | 40.62 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 135 | 40.63 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 158 | 40.65 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 160 | 40.66 | radiation | 10 | 720 | < th | dose independent | sin | 15 | NA |
| 178 | 40.68 | temperature | 20 | 4320 | > th | dose dependent | sin | 23 | NA |
| 197 | 40.70 | radiation | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 207 | 40.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 217 | 40.71 | wind | 1 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 229 | 40.73 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 269 | 40.76 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 276 | 40.77 | radiation | 10 | 720 | < th | dose independent | rect. | 8 | 21 |
| 278 | 40.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 287 | 40.79 | humidity | 90 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 294 | 40.80 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 299 | 40.80 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 18 |
| 300 | 40.81 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 303 | 40.81 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 17 |
| 365 | 40.86 | humidity | 70 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 400 | 40.88 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 401 | 40.88 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 448 | 40.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 450 | 40.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 14 |
| 458 | 40.91 | humidity | 70 | 1440 | > th | dose independent | sin | 8 | NA |
| 472 | 40.91 | radiation | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 487 | 40.92 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 514 | 40.93 | radiation | 1 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 538 | 40.95 | humidity | 70 | 1440 | < th | dose independent | sin | 8 | NA |
| 539 | 40.95 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 549 | 40.95 | radiation | 40 | 1440 | < th | dose dependent | rect. | 7 | 6 |
| 616 | 40.99 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 628 | 41.00 | temperature | 20 | 14400 | > th | dose independent | sin | 12 | NA |
| 641 | 41.00 | radiation | 10 | 720 | < th | dose independent | rect. | 8 | 17 |
| 655 | 41.01 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 657 | 41.01 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 767 | 41.03 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 783 | 41.04 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 796 | 41.04 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 809 | 41.05 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 849 | 41.07 | radiation | 10 | 720 | < th | dose independent | rect. | 13 | 16 |
| 850 | 41.07 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 17 |
| 866 | 41.08 | wind | 1 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 882 | 41.08 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 887 | 41.08 | radiation | 40 | 1440 | < th | dose dependent | rect. | 3 | 10 |
| 914 | 41.09 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 930 | 41.09 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 939 | 41.10 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 968 | 41.11 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 996 | 41.12 | atmosphere | 995 | 43200 | > th | dose independent | sin | 5 | NA |