BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0248200 Os11g0248200|AK107293
(354 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G43970.1 | chr2:18205535-18208031 REVERSE LENGTH=546 248 2e-66
AT3G19090.1 | chr3:6601466-6603709 FORWARD LENGTH=456 203 9e-53
AT5G46250.1 | chr5:18755388-18758056 FORWARD LENGTH=423 149 2e-36
AT4G32720.1 | chr4:15787313-15789683 FORWARD LENGTH=434 60 3e-09
AT1G79880.1 | chr1:30046222-30048336 REVERSE LENGTH=400 51 1e-06
>AT2G43970.1 | chr2:18205535-18208031 REVERSE LENGTH=546
Length = 545
Score = 248 bits (634), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/213 (60%), Positives = 157/213 (73%), Gaps = 9/213 (4%)
Query: 1 YFSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQSNAMLASALRTSSKLVVSN 60
YFSD+NLATT+HLMRFI KDPEGYVPI VVA FKKIKA+I +N+ LA+ L+ S+KL VS
Sbjct: 204 YFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNSAKLFVSE 263
Query: 61 DGTRVKREQPFTESDLEELQARIVVAENLPDDHCYQNLMKLFSTVGSVKTIRTCYPQTPN 120
DG +V+R P TES +EELQ+RI+VAENLP+DHCYQNLMK+FSTVGSVK IRTC PQ N
Sbjct: 264 DGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTVGSVKNIRTCQPQN-N 322
Query: 121 GTG--PVTNRSAKLD-MLFANKLHAFVEYDTVEDAEKAIVELNDERNWRNGLRVRLLNTC 177
G+G P +AK D LF+NK+HAFVEY+ VE AE+A+ EL++ NWR+GL+VRL+
Sbjct: 323 GSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTELSEAGNWRSGLKVRLMLKH 382
Query: 178 MTXXXXXXX----XXHDINDGHGVEDDVSTSNQ 206
T HD + H EDD +TS Q
Sbjct: 383 QTKEPKQGQGRGRKGHDADVEH-EEDDATTSEQ 414
>AT3G19090.1 | chr3:6601466-6603709 FORWARD LENGTH=456
Length = 455
Score = 203 bits (517), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 125/176 (71%), Gaps = 6/176 (3%)
Query: 2 FSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQSNAMLASALRTSSKLVVSND 61
F+D++L E + + I+KDPEGYVP+S +A KKIKAL ++ +++ ALR+SSKLVVS D
Sbjct: 156 FTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSED 215
Query: 62 GTRVKREQPFTESDLEELQARIVVAENLPDDHCYQNLMKLFSTVGSVKTIRTCYPQTPNG 121
G +VKR FT+ D EELQ R VVAENLPDDH YQNL K+F VG+VK IR C+P N
Sbjct: 216 GKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNS 275
Query: 122 TGPVTNRSAKLDMLFANKLHAFVEYDTVEDAEKAIVELNDERNWRNGLRVRLLNTC 177
+ P K D L +NK+HA +EYD A+KA+ +LNDERNWR GLRVRLL C
Sbjct: 276 SRP------KGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRVRLLLRC 325
>AT5G46250.1 | chr5:18755388-18758056 FORWARD LENGTH=423
Length = 422
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 111/174 (63%), Gaps = 6/174 (3%)
Query: 1 YFSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQSNAMLASALRTSSKLVVSN 60
YFSD NL T + L+ + ++ +G+VPIS +A F K+K L + +A++ SAL+ SS LVVS
Sbjct: 114 YFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSA 173
Query: 61 DGTRVKREQPFTESDLEELQARIVVAENLPDDHCYQNLMKLFSTVGSVKTIRTCYPQTPN 120
D +VKR P E + + + V+ ENLP+DH +N+ ++F GS+K++ C P
Sbjct: 174 DEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVE 231
Query: 121 GTGPVTNRSAKLDMLFANKLHAFVEYDTVEDAEKAIVELNDERNWRNGLRVRLL 174
+ + K + +LHAFVEY+TVE AEKA LN+E++WRNGLRV+LL
Sbjct: 232 ----ESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLL 281
>AT4G32720.1 | chr4:15787313-15789683 FORWARD LENGTH=434
Length = 433
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
Query: 1 YFSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQ------------SNAMLAS 48
YFSD NL + L + +T+ +G V ++++ F K++ ++ + +A
Sbjct: 21 YFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPEDTIKAVAD 80
Query: 49 ALRTSSKLVVSNDGTRVKREQPF--TESDLEELQARIVVAENLPDDHCYQNLMKLFSTVG 106
LRTSS L +S+DG +V R E +E+L AR V A D +++ FS G
Sbjct: 81 TLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSYDVKREDVESFFSQYG 140
Query: 107 SVKTIR 112
V ++R
Sbjct: 141 KVNSVR 146
>AT1G79880.1 | chr1:30046222-30048336 REVERSE LENGTH=400
Length = 399
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 1 YFSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQSNAM------------LAS 48
YFSD NL T L R +TK +G V + +V F +++ L+ + +A+
Sbjct: 20 YFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNINREDIPPRIVEEVAN 79
Query: 49 ALRTSSKLVVSNDGTRVKREQPFT--ESDLEELQARIVVAENLPDDHCYQNLMKLFSTVG 106
LRTS L VSN+G R+ R + E LE++ R + A +++ FS
Sbjct: 80 LLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPFEYSIKMEDVSSFFSQYA 139
Query: 107 SVKTIR 112
V ++R
Sbjct: 140 KVNSVR 145
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,546,143
Number of extensions: 181749
Number of successful extensions: 515
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 5
Length of query: 354
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,364,969
Effective search space: 2124702126
Effective search space used: 2124702126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)