BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0234200 Os11g0234200|AK105440
(715 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0234200 Zinc finger, FYVE/PHD-type domain containing p... 1382 0.0
Os01g0877500 Protein of unknown function UPF0054 family pro... 534 e-151
Os09g0449000 Protein of unknown function UPF0054 family pro... 261 2e-69
Os03g0716200 Conserved hypothetical protein 179 6e-45
>Os11g0234200 Zinc finger, FYVE/PHD-type domain containing protein
Length = 715
Score = 1382 bits (3576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/695 (95%), Positives = 662/695 (95%)
Query: 21 PKRARVTAEPSLLDVRAFPGQKEEGEKQPARXXXXXXXXXXXTFRAQVRGFLARCAVAVP 80
PKRARVTAEPSLLDVRAFPGQKEEGEKQPAR TFRAQVRGFLARCAVAVP
Sbjct: 21 PKRARVTAEPSLLDVRAFPGQKEEGEKQPARGGGKKSSSSSSTFRAQVRGFLARCAVAVP 80
Query: 81 ASEAGELSPGMSSWHVGFTTXXXXXXXXXXXXXXXXXXXXXXYCEHCTVAGWSKHPVCSK 140
ASEAGELSPGMSSWHVGFTT YCEHCTVAGWSKHPVCSK
Sbjct: 81 ASEAGELSPGMSSWHVGFTTAGGEAVAVMEVVEEEVARARRVYCEHCTVAGWSKHPVCSK 140
Query: 141 RYHFIIRNENETGTSKTCRRCGFMVALQETRCPSCNHVGLSRDDPEDWDYVQLESPRHLL 200
RYHFIIRNENETGTSKTCRRCGFMVALQETRCPSCNHVGLSRDDPEDWDYVQLESPRHLL
Sbjct: 141 RYHFIIRNENETGTSKTCRRCGFMVALQETRCPSCNHVGLSRDDPEDWDYVQLESPRHLL 200
Query: 201 HGIVHENGFGHLVRINGREGGSSVMTGSQLINFWDRLCRYLRVRKVSVIDVSKKYGADYR 260
HGIVHENGFGHLVRINGREGGSSVMTGSQLINFWDRLCRYLRVRKVSVIDVSKKYGADYR
Sbjct: 201 HGIVHENGFGHLVRINGREGGSSVMTGSQLINFWDRLCRYLRVRKVSVIDVSKKYGADYR 260
Query: 261 SLHAVATGCSWYGLWGFKLSSGSFGITPQDYSKAVESLSSVPLSNFFPHTRSPRNQLQNT 320
SLHAVATGCSWYGLWGFKLSSGSFGITPQDYSKAVESLSSVPLSNFFPHTRSPRNQLQNT
Sbjct: 261 SLHAVATGCSWYGLWGFKLSSGSFGITPQDYSKAVESLSSVPLSNFFPHTRSPRNQLQNT 320
Query: 321 IAFYQSLSRHPLTTIRELFAYIMELATGKSVHKEKMAYDANYQEEFPEEELQRATNIALK 380
IAFYQSLSRHPLTTIRELFAYIMELATGKSVHKEKMAYDANYQEEFPEEELQRATNIALK
Sbjct: 321 IAFYQSLSRHPLTTIRELFAYIMELATGKSVHKEKMAYDANYQEEFPEEELQRATNIALK 380
Query: 381 ILRAADRWVATRTLKAVTSHPIGSPQLVDYCIKTLGGTRTDDGMVVAIRCNSEMNTVEYR 440
ILRAADRWVATRTLKAVTSHPIGSPQLVDYCIKTLGGTRTDDGMVVAIRCNSEMNTVEYR
Sbjct: 381 ILRAADRWVATRTLKAVTSHPIGSPQLVDYCIKTLGGTRTDDGMVVAIRCNSEMNTVEYR 440
Query: 441 LTTETLFPPNNVCTLTQDHLFRDIKFLYDALLYPYTMHPYMPEENYQHAKRSAMILLDCK 500
LTTETLFPPNNVCTLTQDHLFRDIKFLYDALLYPYTMHPYMPEENYQHAKRSAMILLDCK
Sbjct: 441 LTTETLFPPNNVCTLTQDHLFRDIKFLYDALLYPYTMHPYMPEENYQHAKRSAMILLDCK 500
Query: 501 QFIKHYDLEEDFLPQNPSQLHIWCQVELADQVDDPPCIPAELITLPQAATIADLKGEAAR 560
QFIKHYDLEEDFLPQNPSQLHIWCQVELADQVDDPPCIPAELITLPQAATIADLKGEAAR
Sbjct: 501 QFIKHYDLEEDFLPQNPSQLHIWCQVELADQVDDPPCIPAELITLPQAATIADLKGEAAR 560
Query: 561 AFRDIYLMLQSFVADQLLDCATASDTTQIKLLFGAKGAVHIKGRCIGGERRFAIYRMERG 620
AFRDIYLMLQSFVADQLLDCATASDTTQIKLLFGAKGAVHIKGRCIGGERRFAIYRMERG
Sbjct: 561 AFRDIYLMLQSFVADQLLDCATASDTTQIKLLFGAKGAVHIKGRCIGGERRFAIYRMERG 620
Query: 621 VDKWTVKCSCGATDDDGERMLSCDTCHMWMHTRCAGISDFDRVPKRYVCKSCKLTHKPKS 680
VDKWTVKCSCGATDDDGERMLSCDTCHMWMHTRCAGISDFDRVPKRYVCKSCKLTHKPKS
Sbjct: 621 VDKWTVKCSCGATDDDGERMLSCDTCHMWMHTRCAGISDFDRVPKRYVCKSCKLTHKPKS 680
Query: 681 SGPRLMYSSAPNKRCKTGTGSFSNAAEGLLWPQIS 715
SGPRLMYSSAPNKRCKTGTGSFSNAAEGLLWPQIS
Sbjct: 681 SGPRLMYSSAPNKRCKTGTGSFSNAAEGLLWPQIS 715
>Os01g0877500 Protein of unknown function UPF0054 family protein
Length = 716
Score = 534 bits (1375), Expect = e-151, Method: Compositional matrix adjust.
Identities = 286/682 (41%), Positives = 385/682 (56%), Gaps = 54/682 (7%)
Query: 22 KRARVTAEPSLLDVRAFPGQKEEGEKQPARXXXXXXXXXXXTFRAQVRGFLARCAVAVP- 80
KRAR E R F G G+ A TFR VRGFLAR A +P
Sbjct: 9 KRARTRVE-----ARDFAGFPPAGDGGAA-----------GTFREAVRGFLARYARLLPL 52
Query: 81 ----ASEAGELSPGMSSWHVGF------TTXXXXXXXXXXXXXXXXXXXXXXYCEHCTVA 130
+ A P + +W V YC+ C V
Sbjct: 53 PSIFSPAAAAAPPHLLTWRVSLRVGEEGDEEGGGGAVELNVVEEDVLRSRSVYCDQCRVV 112
Query: 131 GWSKHPVCSKRYHFIIRNENETGTSK---TCRRCGFMVALQETRCPSCNHVGLSRDDPED 187
GWS HPVC KRYHFII N+N K C RCG E+RC CN + ++ E+
Sbjct: 113 GWSGHPVCGKRYHFIIENDNNQVCGKRHSCCLRCGTPTVAGESRCLLCN-FDMDGEELEE 171
Query: 188 WDYVQLESPRHLLHGIVHENGFGHLVRINGREGGSSVMTGSQLINFWDRLCRYLRVRKVS 247
Y+ L+ HLLH +VH NG+GHL+R+NGREGGS +TG +++FWDRLC+ L VRKV+
Sbjct: 172 CGYMHLDDNTHLLHAVVHANGYGHLLRVNGREGGSRCLTGRDIMSFWDRLCKVLHVRKVT 231
Query: 248 VIDVSKKYGADYRSLHAVATGCSWYGLWGFKLSSGSFGITPQDYSKAVESLSSVPLSNFF 307
V+D+SKK+G +YR LHA+ +G WYG WG+K +GSF +T Y +AV++LS + L+ +F
Sbjct: 232 VMDISKKHGMEYRLLHAITSGHPWYGEWGYKFGAGSFALTSDTYQEAVDTLSGIQLALYF 291
Query: 308 PHTRSPRNQLQNTIAFYQSLSRHPLTTIRELFAYIMEL--------ATGKSVHKEKMAYD 359
H + R LQNTIA Y +LS L T+R+LF +IM L T K E
Sbjct: 292 SHRQPIRTPLQNTIALYWALSDRQLVTVRDLFRFIMHLLHQARKKNETSKPTTDEHKEVA 351
Query: 360 ANYQEEFPEEELQRATNIALKILRAAD--RWVATRTLKAVTSHPIGSPQLVDYCIKTLGG 417
+N ++ +E++ RA LK+LR +WV+ R L+ S + S +L+DY ++ LGG
Sbjct: 352 SNVLCKWTKEDIDRAETAMLKVLRVVQPGQWVSWRALRGAASKAVDSQELLDYSLRGLGG 411
Query: 418 TRTDDGMVVAIRCNSEMNTVEYRLTTET-------LFPPNNVCTLTQDHLFRDIKFLYDA 470
DDG +A+RCN+E + +EYRL + F P + DHL D+KFLY+A
Sbjct: 412 KLMDDGHFIAVRCNAETSAIEYRLEDNSNQSVDAAAFGP------SVDHLLHDLKFLYNA 465
Query: 471 LLYPYTMHPYMPEENYQHAKRSAMILLDCKQFIKHYDLEEDFLPQNPSQLHIWCQVELAD 530
LL P TM PE + +A +LDCKQFIKHYD P NP L + C +EL D
Sbjct: 466 LLNPETMLASQPEVIGASSHSAAAKILDCKQFIKHYDQHTPRAPLNPFLLSVRCSIELLD 525
Query: 531 QVDDPPCIPAELITLPQAATIADLKGEAARAFRDIYLMLQSFVADQLLDCATASDTTQIK 590
D P EL+ LP +AT+A+LK +A RAF++ YLM QS+ +QL D SDTT +K
Sbjct: 526 HPKDYTAPPVELVLLPASATLAELKIQATRAFQETYLMFQSYQVEQLPDFPNFSDTTLVK 585
Query: 591 LLFGAKGAVHIKGRCIGGERRFAIYRMERGVDKWTVKCSCGATDDDGERMLSCDTCHMWM 650
+ G+ V ++GRC G RR +RMERG++ WTV C+CGA DDDGERML+CD C +W
Sbjct: 586 HVLGSSQLVRVRGRCTGDNRRIVQFRMERGLENWTVDCTCGAKDDDGERMLACDVCGVWQ 645
Query: 651 HTRCAGISDFDRVPKRYVCKSC 672
HTRC+GISDFD VP++++C+ C
Sbjct: 646 HTRCSGISDFDDVPEKFICRKC 667
>Os09g0449000 Protein of unknown function UPF0054 family protein
Length = 679
Score = 261 bits (666), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 179/588 (30%), Positives = 268/588 (45%), Gaps = 56/588 (9%)
Query: 124 CEHCTVAGWSKHPVCSKRYHFII-RNENETGTSKTCRRCGFMVALQETRCPSCNHVGL-- 180
C C GW +H +CSKRYHF++ R E+ A + C + NH G
Sbjct: 97 CHLCRHIGWGRHLICSKRYHFLLPRRES--------------AAEADGLCFAINHGGGGG 142
Query: 181 SRDDPEDWDYVQLESPRHLLHGIVHENGFGHLVRINGREGGSSVMTGSQLINFWDRLCRY 240
+ S HLLHG+VH NG+GHLV ++G EGGS ++G Q+++ WDR+C
Sbjct: 143 AEKASSKGTTTTASSRGHLLHGVVHLNGYGHLVALHGLEGGSDFVSGHQIMDLWDRICSA 202
Query: 241 LRVRKVSVIDVSKKYGADYRSLHAVATGCSWYGLWGFKLSSGSFGITPQDYSKAVESLSS 300
L VR VS++D ++K + R LH VA G +W+G WG++ S+G+ Y +++ L S
Sbjct: 203 LHVRTVSLVDTARKGHMELRLLHGVAYGETWFGRWGYRYGRPSYGVALPSYRQSLHVLGS 262
Query: 301 VPLSNFFPHTRSPRNQLQNTIAFYQSLSRHPLTTIRELFAYIMEL-ATGKSVHKEKMAYD 359
+PL PH +L + YQ++S H L ++ +L +++EL A + M Y
Sbjct: 263 MPLCVLVPHLSCFSQELPMVVTKYQAISGHKLLSLGDLLRFMLELRARLPATSVTAMDYR 322
Query: 360 ANYQE---EFPEEELQRATNIALKILRAAD---RWVATRTLKAVTSHPIGSPQLVDYCIK 413
E + + + A + LR A+ RWV + ++ IG L+D+ +K
Sbjct: 323 GIMSEASCRWSAKRVDMAARAVVDALRRAEPAARWVTRQEVRDAARAYIGDTGLLDFVLK 382
Query: 414 TLGGTRTDDGMVVAIRCNSEMNTVEYRLTTETLFPPNNVC--------------TLTQDH 459
+LG + VV N +EY L + P LT+
Sbjct: 383 SLGNHIVGN-YVVRRTMNPVTKVLEYCLEDVSSVLPAVAAGGGVPAQGKMRVRFQLTRAQ 441
Query: 460 LFRDIKFLYDALLYPYTMHPYMPEENYQHAKRSAMILLDCKQFIKHYDLEEDFLPQNP-- 517
L RD+ LY +L + + + + ++LD K F+K Y + N
Sbjct: 442 LMRDLVHLYRHVLKEPSQ--ALTGGAFGAIPVAVRMVLDIKHFVKDYHEGQAAASSNGGG 499
Query: 518 --SQLHI-WCQVELADQVDDPPCIPAELITLPQAATIADLKGEAARAFRDIYLMLQSFVA 574
HI C L P E +TLP AT+ +LK EA R F ++YL L+SF A
Sbjct: 500 GFGHPHINLCCTLLVSNGSPELAPPYETVTLPAHATVGELKWEAQRVFSEMYLGLRSFAA 559
Query: 575 DQLLDCATASDTTQIKLLFGAKGAVHIKGRC---IGG---ERRFAIYRME----RGVDKW 624
D ++ + + L AV ++G I G ER+ G +
Sbjct: 560 DSVVGVGADQEGLPVLGLVDVGSAVVVQGSVGEQINGEDHERKEEAAAAAVCEGSGGGER 619
Query: 625 TVKCSCGATDDDGERMLSCDTCHMWMHTRCAGISDFDRVPKRYVCKSC 672
V C+CGA DDDGERM CD C W HTRCAGI+D + P ++C C
Sbjct: 620 VVDCACGAVDDDGERMACCDICEAWQHTRCAGIADTEDAPHVFLCSRC 667
>Os03g0716200 Conserved hypothetical protein
Length = 657
Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 175/668 (26%), Positives = 274/668 (41%), Gaps = 151/668 (22%)
Query: 35 VRAFPGQKEEGEKQPARXXXXXXXXXXXTFRAQVRGFLARCAVAVPASEAGELSPGMSS- 93
+R FPG++ G FR VR L + A PAS A PG +S
Sbjct: 69 LRDFPGREAAG--------------LGGAFRDNVRWLLRQWGGASPASPAAG-GPGSASA 113
Query: 94 -----WHVGFTTXXXXXXXXXXXXXXXXXXXXXXYCEHCTVAGWSKHPVCSKRYHFIIRN 148
W V + C++C AGWS H V ++YHFII
Sbjct: 114 AVAVAWRVLLSDDRTGVVVPIFAVEEPVASSPKPLCDYCRWAGWSHHWVSKRKYHFII-- 171
Query: 149 ENETGTSKTCRRCGFMVALQETRCPSCNHVGLSRDDPEDWDY-----VQLESPRHLLHGI 203
P+ P DWD V L HLLHG+
Sbjct: 172 ------------------------PA----------PADWDRQLAADVILGRTDHLLHGL 197
Query: 204 VHENGFGHLVRINGREGGSSVMTGSQLINFWDRLCRYLRVRKVSVIDVSKKYGADYRSLH 263
+H NGFGHLV + GR+GGS+ ++G +++ WD LC LR R VSV+D S+K D R L
Sbjct: 198 IHSNGFGHLVMLRGRDGGSTALSGRDIMDIWDCLCSALRARAVSVVDFSQKRSLDLRLLL 257
Query: 264 AVATGCSWYGLWGFKLSSGSFGITPQDYSKAVESLSSVPLSNFFPHTRSPRNQLQNTIAF 323
+VA G +W+ WG+ L+ G F ++ Y+ +VE+L+++P+ + RS ++ +
Sbjct: 258 SVAHGDTWFTRWGYCLARGCFCVSTSTYAASVEALAALPVD----YLRS--RHVRRVVTI 311
Query: 324 YQSLSRHPLTTIRELFAYI---------MELATGKSVHK-EKMAYDANYQEEFPEEELQR 373
Y+ LS PL T+RE + ++L K+ + + M + + ++ QR
Sbjct: 312 YRRLSNKPLVTVREFLRCLLDWKHLEPPLQLPPVKTCTRLQFMLPKPSVMKRHRQQPCQR 371
Query: 374 ATNIALKILRAADRWVATRTLKA------------------------VTSHPIGSPQLVD 409
++ + +L+ RW R L A IG L+D
Sbjct: 372 FEDV-IDLLQC--RWSKKRLLDAAEVVVDRLLEHGSGAEMTRQAVRDAARGAIGDTGLLD 428
Query: 410 YCIKTLGGTRTDDGMVVAIRCNSEMNTV-----EYRLTTETLFPPNNVCT--------LT 456
+ IK+LG T + +V + ++E + EY T L CT +
Sbjct: 429 FVIKSLGDTIVGNYIVRRVP-DAETRVLHFSLEEYEEPTPALLDVEVECTPLPPVVRWPS 487
Query: 457 QDHLFRDIKFLYDALLYPYTMHPYMPEENYQHAKRSAMILLDCKQFIKHYDLEED----- 511
+ RD++ +Y A++ + +A +LDCK ++K + L ++
Sbjct: 488 TVEVERDLRAVYRAMV--------------EVRSEAAQAVLDCKHWVKWWGLGDESDDQL 533
Query: 512 --FLPQNPSQLHIWCQVELADQVDDPPCIPAELITLPQAATIADLKGEAARAFRDIYLML 569
F+ P W EL P E++ +P A++ +L E+ A RD Y
Sbjct: 534 RFFVEWQPQP---WEAAELIR-----PMPLGEIVVVPLHASMGELLVESEHALRDTYYFF 585
Query: 570 QSFVADQLLDCATASDTTQIKLLFGAKGAVHIKGRCIGGERRFAIYRMERGVDKWTVKCS 629
+ F A+ L A + +L GA+ I G + + R G+D W V+C
Sbjct: 586 EEFQAEGL--HGIAGEKWDPVMLGGAENGDTISVYGNGADMETEL-RCHGGLDLWEVRCV 642
Query: 630 CGATDDDG 637
CGA DDDG
Sbjct: 643 CGAQDDDG 650
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,850,363
Number of extensions: 973797
Number of successful extensions: 2054
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2044
Number of HSP's successfully gapped: 5
Length of query: 715
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 607
Effective length of database: 11,396,689
Effective search space: 6917790223
Effective search space used: 6917790223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)