Os03g0716200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0716200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 215.05 | 0.689 | 4.81 | 1.35 | 1.44 | 3.16 | 2.2 | 1.65 | -0.0826 | 19.1 | 20.21 | 28 | -- | -- |
| 217.22 | 0.686 | 4.84 | 1.08 | 1.38 | 3.16 | 2.23 | -- | -0.139 | 18.9 | 20.54 | 46 | -- | -- |
| 226.71 | 0.701 | 4.8 | 1.31 | 1.4 | 3.04 | -- | 1.72 | -0.0552 | 18.7 | 20.11 | 56 | -- | -- |
| 229.68 | 0.706 | 4.83 | 1.05 | 1.36 | 3.12 | -- | -- | -0.127 | 18.8 | 21.2 | 53 | -- | -- |
| 275.96 | 0.774 | 4.78 | 1.23 | -- | 3.51 | -- | 1.72 | -0.0616 | -- | 23.17 | 223 | -- | -- |
| 369.5 | 0.901 | 4.72 | 1.71 | 2.22 | -- | 2.52 | -- | 0.384 | 17.1 | -- | -- | -- | -- |
| 385.26 | 0.919 | 4.72 | 1.72 | 2.24 | -- | -- | -- | 0.396 | 17 | -- | -- | -- | -- |
| 276.31 | 0.774 | 4.8 | 0.995 | -- | 3.7 | -- | -- | -0.118 | -- | 23.3 | 227 | -- | -- |
| 255.64 | 0.745 | 4.87 | -- | 1.25 | 3.48 | -- | -- | -0.304 | 19.1 | 20.09 | 78 | -- | -- |
| 648.56 | 1.19 | 4.69 | 1.64 | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
| 462.98 | 1.01 | 4.76 | -- | 2.21 | -- | -- | -- | 0.205 | 17 | -- | -- | -- | -- |
| 299.99 | 0.807 | 4.83 | -- | -- | 3.85 | -- | -- | -0.274 | -- | 23.01 | 227 | -- | -- |
| 719.18 | 1.25 | 4.73 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 212.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 6 | 215.25 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 14 | 220.15 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 17 | 220.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 33 | 222.36 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 44 | 224.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 47 | 224.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 49 | 224.55 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 53 | 224.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 59 | 225.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 144 | 231.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 179 | 234.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 184 | 235.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 203 | 235.90 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 208 | 236.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 209 | 236.08 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 229 | 236.63 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 242 | 236.86 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 247 | 237.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 254 | 237.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 266 | 237.62 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 8 |
| 372 | 239.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 376 | 239.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 449 | 240.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 466 | 240.73 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 477 | 240.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 479 | 240.93 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 16 |
| 509 | 241.38 | temperature | 20 | 4320 | > th | dose dependent | sin | 13 | NA |
| 822 | 244.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 930 | 244.78 | temperature | 10 | 4320 | > th | dose dependent | sin | 15 | NA |