Os01g0877500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0054 family protein.
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Os01g0877500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0054 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.88 | 0.285 | 10.9 | 1.44 | 0.556 | -0.527 | -0.611 | -0.115 | 0.217 | 1.69 | 999 | 5781 | -- | -- |
| 36.7 | 0.282 | 10.9 | 1.45 | 0.552 | -0.642 | -0.64 | -- | 0.212 | 1.68 | 998.9 | 7902 | -- | -- |
| 38.36 | 0.288 | 10.9 | 1.47 | 0.555 | -0.536 | -- | -0.102 | 0.217 | 1.69 | 998.9 | 5720 | -- | -- |
| 38.16 | 0.288 | 10.9 | 1.49 | 0.55 | -0.657 | -- | -- | 0.217 | 1.66 | 998.7 | 10267 | -- | -- |
| 56.65 | 0.351 | 10.9 | 1.55 | -- | -0.748 | -- | 0.544 | 0.231 | -- | 998.9 | 10511 | -- | -- |
| 45.26 | 0.315 | 10.9 | 1.35 | 0.562 | -- | -0.641 | -- | 0.269 | 1.69 | -- | -- | -- | -- |
| 46.89 | 0.321 | 10.9 | 1.37 | 0.561 | -- | -- | -- | 0.272 | 1.68 | -- | -- | -- | -- |
| 56.73 | 0.351 | 10.9 | 1.51 | -- | -0.729 | -- | -- | 0.229 | -- | 998.7 | 9655 | -- | -- |
| 93.05 | 0.449 | 10.9 | -- | 0.586 | -0.405 | -- | -- | 0.0641 | 1.72 | 1002 | 7496 | -- | -- |
| 66.09 | 0.38 | 10.9 | 1.4 | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
| 96.7 | 0.46 | 10.9 | -- | 0.586 | -- | -- | -- | 0.119 | 1.75 | -- | -- | -- | -- |
| 113.51 | 0.496 | 10.9 | -- | -- | -0.426 | -- | -- | 0.0787 | -- | 1002 | 7433 | -- | -- |
| 117.61 | 0.506 | 10.9 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.74 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 3 | 35.80 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 4 | 35.84 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 3 | 13 |
| 6 | 35.86 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 3 | 12 |
| 14 | 36.00 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 20 | 36.01 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 2 | 13 |
| 25 | 36.02 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 30 | 36.03 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 38 | 36.06 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 70 | 36.14 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 78 | 36.16 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 99 | 36.21 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 2 | NA |
| 120 | 36.27 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 126 | 36.28 | atmosphere | 1000.0 | 14400 | < th | dose dependent | sin | 20 | NA |
| 198 | 36.38 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 3 | 20 |
| 341 | 36.51 | wind | 9.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 403 | 36.56 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 6 | 18 |
| 409 | 36.56 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 436 | 36.57 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 489 | 36.58 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 527 | 36.59 | atmosphere | 1000.0 | 14400 | < th | dose dependent | no | NA | NA |
| 541 | 36.60 | atmosphere | 1000.0 | 14400 | > th | dose independent | no | NA | NA |
| 553 | 36.60 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 555 | 36.60 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 565 | 36.60 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 13 | 22 |
| 578 | 36.60 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 590 | 36.61 | atmosphere | 1000.0 | 14400 | < th | dose independent | no | NA | NA |
| 655 | 36.61 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 731 | 36.63 | atmosphere | 1000.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 787 | 36.63 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 791 | 36.64 | atmosphere | 1000.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 795 | 36.64 | atmosphere | 1000.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 894 | 36.65 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 941 | 36.66 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 950 | 36.66 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 955 | 36.66 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 20 | 15 |