BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0877500 Os01g0877500|AK101067
(716 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0877500 Protein of unknown function UPF0054 family pro... 1338 0.0
Os11g0234200 Zinc finger, FYVE/PHD-type domain containing p... 530 e-150
Os09g0449000 Protein of unknown function UPF0054 family pro... 304 2e-82
Os03g0716200 Conserved hypothetical protein 196 7e-50
>Os01g0877500 Protein of unknown function UPF0054 family protein
Length = 716
Score = 1338 bits (3464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/716 (91%), Positives = 654/716 (91%)
Query: 1 MVVNSRPLKRARTRVEARXXXXXXXXXXXXXXXTFREAVRGFLARYARXXXXXXXXXXXX 60
MVVNSRPLKRARTRVEAR TFREAVRGFLARYAR
Sbjct: 1 MVVNSRPLKRARTRVEARDFAGFPPAGDGGAAGTFREAVRGFLARYARLLPLPSIFSPAA 60
Query: 61 XXXXXXXXTWRVSLRVXXXXXXXXXXXAVELNVVEEDVLRSRSVYCDQCRVVGWSGHPVC 120
TWRVSLRV AVELNVVEEDVLRSRSVYCDQCRVVGWSGHPVC
Sbjct: 61 AAAPPHLLTWRVSLRVGEEGDEEGGGGAVELNVVEEDVLRSRSVYCDQCRVVGWSGHPVC 120
Query: 121 GKRYHFIIENDNNQVCGKRHSCCLRCGTPTVAGESRCLLCNFDMDGEELEECGYMHLDDN 180
GKRYHFIIENDNNQVCGKRHSCCLRCGTPTVAGESRCLLCNFDMDGEELEECGYMHLDDN
Sbjct: 121 GKRYHFIIENDNNQVCGKRHSCCLRCGTPTVAGESRCLLCNFDMDGEELEECGYMHLDDN 180
Query: 181 THLLHAVVHANGYGHLLRVNGREGGSRCLTGRDIMSFWDRLCKVLHVRKVTVMDISKKHG 240
THLLHAVVHANGYGHLLRVNGREGGSRCLTGRDIMSFWDRLCKVLHVRKVTVMDISKKHG
Sbjct: 181 THLLHAVVHANGYGHLLRVNGREGGSRCLTGRDIMSFWDRLCKVLHVRKVTVMDISKKHG 240
Query: 241 MEYRLLHAITSGHPWYGEWGYKFGAGSFALTSDTYQEAVDTLSGIQLALYFSHRQPIRTP 300
MEYRLLHAITSGHPWYGEWGYKFGAGSFALTSDTYQEAVDTLSGIQLALYFSHRQPIRTP
Sbjct: 241 MEYRLLHAITSGHPWYGEWGYKFGAGSFALTSDTYQEAVDTLSGIQLALYFSHRQPIRTP 300
Query: 301 LQNTIALYWALSDRQLVTVRDLFRFIMHLLHQARKKNETSKPTTDEHKEVASNVLCKWTK 360
LQNTIALYWALSDRQLVTVRDLFRFIMHLLHQARKKNETSKPTTDEHKEVASNVLCKWTK
Sbjct: 301 LQNTIALYWALSDRQLVTVRDLFRFIMHLLHQARKKNETSKPTTDEHKEVASNVLCKWTK 360
Query: 361 EDIDRAETAMLKVLRVVQPGQWVSWRALRGAASKAVDSQELLDYSLRGLGGKLMDDGHFI 420
EDIDRAETAMLKVLRVVQPGQWVSWRALRGAASKAVDSQELLDYSLRGLGGKLMDDGHFI
Sbjct: 361 EDIDRAETAMLKVLRVVQPGQWVSWRALRGAASKAVDSQELLDYSLRGLGGKLMDDGHFI 420
Query: 421 AVRCNAETSAIEYRLEDNSNQSVDAAAFGPSVDHLLHDLKFLYNALLNPETMLASQPEVI 480
AVRCNAETSAIEYRLEDNSNQSVDAAAFGPSVDHLLHDLKFLYNALLNPETMLASQPEVI
Sbjct: 421 AVRCNAETSAIEYRLEDNSNQSVDAAAFGPSVDHLLHDLKFLYNALLNPETMLASQPEVI 480
Query: 481 GASSHSAAAKILDCKQFIKHYDQHTPRAPLNPFLLSVRCSIELLDHPKDYTAPPVELVLL 540
GASSHSAAAKILDCKQFIKHYDQHTPRAPLNPFLLSVRCSIELLDHPKDYTAPPVELVLL
Sbjct: 481 GASSHSAAAKILDCKQFIKHYDQHTPRAPLNPFLLSVRCSIELLDHPKDYTAPPVELVLL 540
Query: 541 PASATLAELKIQATRAFQETYLMFQSYQVEQLPDFPNFSDTTLVKHVLGSSQLVRVRGRC 600
PASATLAELKIQATRAFQETYLMFQSYQVEQLPDFPNFSDTTLVKHVLGSSQLVRVRGRC
Sbjct: 541 PASATLAELKIQATRAFQETYLMFQSYQVEQLPDFPNFSDTTLVKHVLGSSQLVRVRGRC 600
Query: 601 TGDNRRIVQFRMERGLENWTVDCTCGAKDDDGERMLACDVCGVWQHTRCSGISDFDDVPE 660
TGDNRRIVQFRMERGLENWTVDCTCGAKDDDGERMLACDVCGVWQHTRCSGISDFDDVPE
Sbjct: 601 TGDNRRIVQFRMERGLENWTVDCTCGAKDDDGERMLACDVCGVWQHTRCSGISDFDDVPE 660
Query: 661 KFICRKCASPXXXXXXXXXXXXXXXXMDVSAAGRCKDEIGSSVGGAGKFGRMATVG 716
KFICRKCASP MDVSAAGRCKDEIGSSVGGAGKFGRMATVG
Sbjct: 661 KFICRKCASPRRGKGRGGGGGNGGSRMDVSAAGRCKDEIGSSVGGAGKFGRMATVG 716
>Os11g0234200 Zinc finger, FYVE/PHD-type domain containing protein
Length = 715
Score = 530 bits (1364), Expect = e-150, Method: Compositional matrix adjust.
Identities = 281/641 (43%), Positives = 379/641 (59%), Gaps = 38/641 (5%)
Query: 34 TFREAVRGFLARYARXXXXXXXXXXXXXXXXXXXXTWRVSLRVXXXXXXXXXXXAVELNV 93
TFR VRGFLAR A +W V + V
Sbjct: 63 TFRAQVRGFLARCA-----VAVPASEAGELSPGMSSWHVGF------TTAGGEAVAVMEV 111
Query: 94 VEEDVLRSRSVYCDQCRVVGWSGHPVCGKRYHFIIENDNNQVCGKRHSCCLRCGTPTVAG 153
VEE+V R+R VYC+ C V GWS HPVC KRYHFII N+N K C RCG
Sbjct: 112 VEEEVARARRVYCEHCTVAGWSKHPVCSKRYHFIIRNENETGTSK---TCRRCGFMVALQ 168
Query: 154 ESRCLLCN-FDMDGEELEECGYMHLDDNTHLLHAVVHANGYGHLLRVNGREGGSRCLTGR 212
E+RC CN + ++ E+ Y+ L+ HLLH +VH NG+GHL+R+NGREGGS +TG
Sbjct: 169 ETRCPSCNHVGLSRDDPEDWDYVQLESPRHLLHGIVHENGFGHLVRINGREGGSSVMTGS 228
Query: 213 DIMSFWDRLCKVLHVRKVTVMDISKKHGMEYRLLHAITSGHPWYGEWGYKFGAGSFALTS 272
+++FWDRLC+ L VRKV+V+D+SKK+G +YR LHA+ +G WYG WG+K +GSF +T
Sbjct: 229 QLINFWDRLCRYLRVRKVSVIDVSKKYGADYRSLHAVATGCSWYGLWGFKLSSGSFGITP 288
Query: 273 DTYQEAVDTLSGIQLALYFSHRQPIRTPLQNTIALYWALSDRQLVTVRDLFRFIMHLLHQ 332
Y +AV++LS + L+ +F H + R LQNTIA Y +LS L T+R+LF +IM L
Sbjct: 289 QDYSKAVESLSSVPLSNFFPHTRSPRNQLQNTIAFYQSLSRHPLTTIRELFAYIMEL--- 345
Query: 333 ARKKNETSKPTTDEHKEVASNVLCKWTKEDIDRAETAMLKVLRVVQPGQWVSWRALRGAA 392
T K E +N ++ +E++ RA LK+LR +WV+ R L+
Sbjct: 346 -----ATGKSVHKEKMAYDANYQEEFPEEELQRATNIALKILRAAD--RWVATRTLKAVT 398
Query: 393 SKAVDSQELLDYSLRGLGGKLMDDGHFIAVRCNAETSAIEYRLEDNSNQSVDAAAFGP-- 450
S + S +L+DY ++ LGG DDG +A+RCN+E + +EYRL + F P
Sbjct: 399 SHPIGSPQLVDYCIKTLGGTRTDDGMVVAIRCNSEMNTVEYRLTTET-------LFPPNN 451
Query: 451 ----SVDHLLHDLKFLYNALLNPETMLASQPEVIGASSHSAAAKILDCKQFIKHYDQHTP 506
+ DHL D+KFLY+ALL P TM PE + +A +LDCKQFIKHYD
Sbjct: 452 VCTLTQDHLFRDIKFLYDALLYPYTMHPYMPEENYQHAKRSAMILLDCKQFIKHYDLEED 511
Query: 507 RAPLNPFLLSVRCSIELLDHPKDYTAPPVELVLLPASATLAELKIQATRAFQETYLMFQS 566
P NP L + C +EL D D P EL+ LP +AT+A+LK +A RAF++ YLM QS
Sbjct: 512 FLPQNPSQLHIWCQVELADQVDDPPCIPAELITLPQAATIADLKGEAARAFRDIYLMLQS 571
Query: 567 YQVEQLPDFPNFSDTTLVKHVLGSSQLVRVRGRCTGDNRRIVQFRMERGLENWTVDCTCG 626
+ +QL D SDTT +K + G+ V ++GRC G RR +RMERG++ WTV C+CG
Sbjct: 572 FVADQLLDCATASDTTQIKLLFGAKGAVHIKGRCIGGERRFAIYRMERGVDKWTVKCSCG 631
Query: 627 AKDDDGERMLACDVCGVWQHTRCSGISDFDDVPEKFICRKC 667
A DDDGERML+CD C +W HTRC+GISDFD VP++++C+ C
Sbjct: 632 ATDDDGERMLSCDTCHMWMHTRCAGISDFDRVPKRYVCKSC 672
>Os09g0449000 Protein of unknown function UPF0054 family protein
Length = 679
Score = 304 bits (778), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 202/615 (32%), Positives = 299/615 (48%), Gaps = 63/615 (10%)
Query: 89 VELNVVEEDVLRSRSVYCDQCRVVGWSGHPVCGKRYHFIIENDNNQVCGKRHSCCLRCGT 148
V L VVEE+V S C CR +GW H +C KRYHF++ +R S
Sbjct: 80 VRLFVVEEEVAASPHRQCHLCRHIGWGRHLICSKRYHFLLP--------RRES------- 124
Query: 149 PTVAGESRCLLCNFDMDG--EELEECGYMHLDDN-THLLHAVVHANGYGHLLRVNGREGG 205
+ C N G E+ G + HLLH VVH NGYGHL+ ++G EGG
Sbjct: 125 -AAEADGLCFAINHGGGGGAEKASSKGTTTTASSRGHLLHGVVHLNGYGHLVALHGLEGG 183
Query: 206 SRCLTGRDIMSFWDRLCKVLHVRKVTVMDISKKHGMEYRLLHAITSGHPWYGEWGYKFGA 265
S ++G IM WDR+C LHVR V+++D ++K ME RLLH + G W+G WGY++G
Sbjct: 184 SDFVSGHQIMDLWDRICSALHVRTVSLVDTARKGHMELRLLHGVAYGETWFGRWGYRYGR 243
Query: 266 GSFALTSDTYQEAVDTLSGIQLALYFSHRQPIRTPLQNTIALYWALSDRQLVTVRDLFRF 325
S+ + +Y++++ L + L + H L + Y A+S +L+++ DL RF
Sbjct: 244 PSYGVALPSYRQSLHVLGSMPLCVLVPHLSCFSQELPMVVTKYQAISGHKLLSLGDLLRF 303
Query: 326 IMHLLHQARKKNETSKPTTDEHKEVASNVLCKWTKEDIDRAETAMLKVLRVVQP-GQWVS 384
++ L R + + T +++ + S C+W+ + +D A A++ LR +P +WV+
Sbjct: 304 MLEL----RARLPATSVTAMDYRGIMSEASCRWSAKRVDMAARAVVDALRRAEPAARWVT 359
Query: 385 WRALRGAASKAVDSQELLDYSLRGLGGKLMDDGHFIAVRC-NAETSAIEYRLEDNSNQSV 443
+ +R AA + LLD+ L+ LG ++ G+++ R N T +EY LED S+ +
Sbjct: 360 RQEVRDAARAYIGDTGLLDFVLKSLGNHIV--GNYVVRRTMNPVTKVLEYCLEDVSS-VL 416
Query: 444 DAAAFGPSVD--------------HLLHDLKFLYNALLNPETMLASQPEVIGASSHSAAA 489
A A G V L+ DL LY +L E A GA A
Sbjct: 417 PAVAAGGGVPAQGKMRVRFQLTRAQLMRDLVHLYRHVLK-EPSQALTGGAFGAIP-VAVR 474
Query: 490 KILDCKQFIKHYDQHTPRAPLN-------PFLLSVRCSIELLDHPKDYTAPPVELVLLPA 542
+LD K F+K Y + A N P + C L+ + APP E V LPA
Sbjct: 475 MVLDIKHFVKDYHEGQAAASSNGGGGFGHPHI--NLCCTLLVSNGSPELAPPYETVTLPA 532
Query: 543 SATLAELKIQATRAFQETYLMFQSYQVEQLPDFPNFSDTTLVKHVLGSSQLVRVRG---- 598
AT+ ELK +A R F E YL +S+ + + + V ++ V V+G
Sbjct: 533 HATVGELKWEAQRVFSEMYLGLRSFAADSVVGVGADQEGLPVLGLVDVGSAVVVQGSVGE 592
Query: 599 RCTGDN--RRIVQFRME----RGLENWTVDCTCGAKDDDGERMLACDVCGVWQHTRCSGI 652
+ G++ R+ G VDC CGA DDDGERM CD+C WQHTRC+GI
Sbjct: 593 QINGEDHERKEEAAAAAVCEGSGGGERVVDCACGAVDDDGERMACCDICEAWQHTRCAGI 652
Query: 653 SDFDDVPEKFICRKC 667
+D +D P F+C +C
Sbjct: 653 ADTEDAPHVFLCSRC 667
>Os03g0716200 Conserved hypothetical protein
Length = 657
Score = 196 bits (497), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 169/650 (26%), Positives = 272/650 (41%), Gaps = 133/650 (20%)
Query: 34 TFREAVRGFLARYARXXXXXXXXXXXXXXXXXXXXTWRVSLRVXXXXXXXXXXXAVELNV 93
FR+ VR L ++ WRV L V +
Sbjct: 83 AFRDNVRWLLRQWGGASPASPAAGGPGSASAAVAVAWRVLL------SDDRTGVVVPIFA 136
Query: 94 VEEDVLRSRSVYCDQCRVVGWSGHPVCGKRYHFIIENDNNQVCGKRHSCCLRCGTPTVAG 153
VEE V S CD CR GWS H V ++YHFII P A
Sbjct: 137 VEEPVASSPKPLCDYCRWAGWSHHWVSKRKYHFII--------------------PAPAD 176
Query: 154 ESRCLLCNFDMDGEELEECGYMHLDDNTHLLHAVVHANGYGHLLRVNGREGGSRCLTGRD 213
R L + + L HLLH ++H+NG+GHL+ + GR+GGS L+GRD
Sbjct: 177 WDRQLAAD-------------VILGRTDHLLHGLIHSNGFGHLVMLRGRDGGSTALSGRD 223
Query: 214 IMSFWDRLCKVLHVRKVTVMDISKKHGMEYRLLHAITSGHPWYGEWGYKFGAGSFALTSD 273
IM WD LC L R V+V+D S+K ++ RLL ++ G W+ WGY G F +++
Sbjct: 224 IMDIWDCLCSALRARAVSVVDFSQKRSLDLRLLLSVAHGDTWFTRWGYCLARGCFCVSTS 283
Query: 274 TYQEAVDTLSGIQLALYFSHRQPIRTPLQNTIALYWALSDRQLVTVRDLFRFIMHLLHQ- 332
TY +V+ L+ + + Y R ++ + +Y LS++ LVTVR+ R ++ H
Sbjct: 284 TYAASVEALAALPVD-YLRSRH-----VRRVVTIYRRLSNKPLVTVREFLRCLLDWKHLE 337
Query: 333 -----------ARKKNETSKPTT---------DEHKEVASNVLCKWTKEDIDRAETAMLK 372
R + KP+ ++V + C+W+K+ + A ++
Sbjct: 338 PPLQLPPVKTCTRLQFMLPKPSVMKRHRQQPCQRFEDVIDLLQCRWSKKRLLDAAEVVVD 397
Query: 373 VLRVVQPGQWVSWRALRGAASKAVDSQELLDYSLRGLGGKLMDDGHFIAVRC-NAETSAI 431
L G ++ +A+R AA A+ LLD+ ++ LG ++ G++I R +AET +
Sbjct: 398 RLLEHGSGAEMTRQAVRDAARGAIGDTGLLDFVIKSLGDTIV--GNYIVRRVPDAETRVL 455
Query: 432 EYRLEDNSNQS------------VDAAAFGPSVDHLLHDLKFLYNALLNPETMLASQPEV 479
+ LE+ + + PS + DL+ +Y A++ +
Sbjct: 456 HFSLEEYEEPTPALLDVEVECTPLPPVVRWPSTVEVERDLRAVYRAMVEVRS-------- 507
Query: 480 IGASSHSAAAKILDCKQFIKHY---DQHTPRAPLNPFLLSVRCSIELLDHPKDYT----- 531
AA +LDCK ++K + D+ + +R +E P +
Sbjct: 508 ------EAAQAVLDCKHWVKWWGLGDESDDQ---------LRFFVEWQPQPWEAAELIRP 552
Query: 532 APPVELVLLPASATLAELKIQATRAFQETYLMFQSYQVEQL---------PDFPNFSDTT 582
P E+V++P A++ EL +++ A ++TY F+ +Q E L P ++
Sbjct: 553 MPLGEIVVVPLHASMGELLVESEHALRDTYYFFEEFQAEGLHGIAGEKWDPVMLGGAENG 612
Query: 583 LVKHVLGSSQLVRVRGRCTGDNRRIVQFRMERGLENWTVDCTCGAKDDDG 632
V G+ + RC G GL+ W V C CGA+DDDG
Sbjct: 613 DTISVYGNGADMETELRCHG------------GLDLWEVRCVCGAQDDDG 650
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,639,851
Number of extensions: 991348
Number of successful extensions: 2126
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2111
Number of HSP's successfully gapped: 4
Length of query: 716
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 608
Effective length of database: 11,396,689
Effective search space: 6929186912
Effective search space used: 6929186912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 160 (66.2 bits)