BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0209900 Os11g0209900|Os11g0209900
(659 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0209900 Aminotransferase, class V family protein 1099 0.0
Os12g0191300 654 0.0
Os01g0729600 Aminotransferase, class V family protein 515 e-146
Os12g0190400 Conserved hypothetical protein 109 8e-24
>Os11g0209900 Aminotransferase, class V family protein
Length = 659
Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/611 (90%), Positives = 552/611 (90%)
Query: 49 VEWVRSQLVGAGAEFDTPFGRRPLVYADHTASGRGLRYVEDYVLHHVLPFYGQYHLPCRF 108
VEWVRSQLVGAGAEFDTPFGRRPLVYADHTASGRGLRYVEDYVLHHVLPFYGQYHLPCRF
Sbjct: 49 VEWVRSQLVGAGAEFDTPFGRRPLVYADHTASGRGLRYVEDYVLHHVLPFYGQYHLPCRF 108
Query: 109 SSHAICELDHDVHGDGEVIDAMLVGNTHTEDSYVGSRTTRMARKAASYIKRCVXXXXXXX 168
SSHAICELDHDVHGDGEVIDAMLVGNTHTEDSYVGSRTTRMARKAASYIKRCV
Sbjct: 109 SSHAICELDHDVHGDGEVIDAMLVGNTHTEDSYVGSRTTRMARKAASYIKRCVGAGGAAG 168
Query: 169 XDVALLFCGSGATAAVKRLQEAMGVAAPPGPLRERAAALLRPEERWVVFVGPYEHHSNLL 228
DVALLFCGSGATAAVKRLQEAMGVAAPPGPLRERAAALLRPEERWVVFVGPYEHHSNLL
Sbjct: 169 GDVALLFCGSGATAAVKRLQEAMGVAAPPGPLRERAAALLRPEERWVVFVGPYEHHSNLL 228
Query: 229 SWRRSXXXXXXXXXXXXXXXXXXXXXXXXXXPEHADRPMLGSFSACSNVTGVLTDTRAVA 288
SWRRS PEHADRPMLGSFSACSNVTGVLTDTRAVA
Sbjct: 229 SWRRSLADVVEVGAGDDGLLDLAALRRALRAPEHADRPMLGSFSACSNVTGVLTDTRAVA 288
Query: 289 RLLHQHGAFACFDFAASGPYVEIDMRPGEVDGYDAVFLSPHKFVGGPGTPGIXXXXXXXX 348
RLLHQHGAFACFDFAASGPYVEIDMRPGEVDGYDAVFLSPHKFVGGPGTPGI
Sbjct: 289 RLLHQHGAFACFDFAASGPYVEIDMRPGEVDGYDAVFLSPHKFVGGPGTPGILLMSRSLY 348
Query: 349 XXXXQPPTTCGGGTVAYVNGASERDTVYLAGVEEREDAGTPPIVGKVRAALAFWVKARVG 408
QPPTTCGGGTVAYVNGASERDTVYLAGVEEREDAGTPPIVGKVRAALAFWVKARVG
Sbjct: 349 RLSSQPPTTCGGGTVAYVNGASERDTVYLAGVEEREDAGTPPIVGKVRAALAFWVKARVG 408
Query: 409 RGGAVALRERAHADAAMAWLLGNPNVEVLGNVAAPRLPIFSFLVFPGDGDDRRLPLHGRF 468
RGGAVALRERAHADAAMAWLLGNPNVEVLGNVAAPRLPIFSFLVFPGDGDDRRLPLHGRF
Sbjct: 409 RGGAVALRERAHADAAMAWLLGNPNVEVLGNVAAPRLPIFSFLVFPGDGDDRRLPLHGRF 468
Query: 469 VAKLLNDLFGVQARGGCACAGPYGHALLGVGDELSLRIRAAIVRGYHGVKPGWTRVSFAY 528
VAKLLNDLFGVQARGGCACAGPYGHALLGVGDELSLRIRAAIVRGYHGVKPGWTRVSFAY
Sbjct: 469 VAKLLNDLFGVQARGGCACAGPYGHALLGVGDELSLRIRAAIVRGYHGVKPGWTRVSFAY 528
Query: 529 YLSGDELRYVLAAIDFVAAHGHRFLPLYAFDWATGDWSFRRAALKRQLMARELLHCHLXX 588
YLSGDELRYVLAAIDFVAAHGHRFLPLYAFDWATGDWSFRRAALKRQLMARELLHCHL
Sbjct: 529 YLSGDELRYVLAAIDFVAAHGHRFLPLYAFDWATGDWSFRRAALKRQLMARELLHCHLGS 588
Query: 589 XXXXXXXXXXXEFQTARKTTAAGKVGGDVSADKFEGYLESARRIARSLPDTWQATVTVPE 648
EFQTARKTTAAGKVGGDVSADKFEGYLESARRIARSLPDTWQATVTVPE
Sbjct: 589 SSATSSDSDGGEFQTARKTTAAGKVGGDVSADKFEGYLESARRIARSLPDTWQATVTVPE 648
Query: 649 GIDPDIVLFRV 659
GIDPDIVLFRV
Sbjct: 649 GIDPDIVLFRV 659
>Os12g0191300
Length = 633
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/626 (53%), Positives = 414/626 (66%), Gaps = 68/626 (10%)
Query: 49 VEWVRSQLVGAGAEFDTPFGRRPLVYADHTASGRGLRYVEDYVLHHVLPFYGQYHLPCRF 108
+EW+RSQLVG EFDTPFGR L YADHTASGR LRY+EDY+L+ VLPFYG
Sbjct: 61 MEWLRSQLVGKDVEFDTPFGRHLLTYADHTASGRSLRYIEDYLLNEVLPFYG-------- 112
Query: 109 SSHAICELDHDVHGDGEVIDAMLVGNTHTEDSYVGSRTTRMARKAASYIKRCVXXXXXXX 168
NTHTEDS+VG + TR+ +AA Y+KRC+
Sbjct: 113 -------------------------NTHTEDSHVGRKMTRLMHRAARYVKRCMGGGAGD- 146
Query: 169 XDVALLFCGSGATAAVKRLQEAMGVAAPPGPLRERAAAL--LRPEERWVVFVGPYEHHSN 226
ALLFCG+G TAA+KRLQE MGVAAP RA LR +ERWVVFVGPYEHHSN
Sbjct: 147 ---ALLFCGAGTTAAIKRLQEVMGVAAPSAAAPLRARLAAGLRWDERWVVFVGPYEHHSN 203
Query: 227 LLSWRRSXXXXXXXXXXXXXXXXXXXXXXXXXXPEHADRPMLGSFSACSNVTGVLTDTRA 286
LLSWRRS P++ADRPMLGSFSACSNVTG++ DTR
Sbjct: 204 LLSWRRSLADVVEIGLVGDGLVDVAALRRALASPQYADRPMLGSFSACSNVTGIVVDTRE 263
Query: 287 VARLLHQHGAFACFDFAASGPYVEIDMRPGEVDGYDAVFLSPHKFVGGPGTPGIXXXXXX 346
+AR+LHQHGAFACFDFAASGP+V+IDM+ GE+DGYDAVFLSPHKF+GGPGTPGI
Sbjct: 264 IARVLHQHGAFACFDFAASGPHVKIDMKSGEIDGYDAVFLSPHKFIGGPGTPGILLMNKS 323
Query: 347 XXXXXXQPPTTCGGGTVAYVNGASERDTVYLAGVEEREDAGTPPIVGKVRAALAFWVKAR 406
QPP+TCGGGTV YVNG +E DT+Y +EEREDAGTP I+ K+RA+LAFWV
Sbjct: 324 LYRLNSQPPSTCGGGTVNYVNGFNEEDTLYYDDIEEREDAGTPAIIQKIRASLAFWVNEY 383
Query: 407 VGRGGAVALRERAHADAAMAWLLGNPNVEVLGNVAAPRLPIFSFLVFPG------DGDDR 460
+G + L E+ + + AM L+ NPNV+VLGN +A RLPIFSFL++P GDDR
Sbjct: 384 IGY-DTIDLHEQIYTEMAMKRLVDNPNVKVLGNTSANRLPIFSFLIYPPMVDSFFHGDDR 442
Query: 461 -------RLPLHGRFVAKLLNDLFGVQARGGCACAGPYGHALLGVGDELSLRIRAAIVRG 513
RLPLHGRFV KLLNDLFG+QARGGCACAGPYG+ LL + +ELSLRIR+A+V G
Sbjct: 443 LAIVRRKRLPLHGRFVTKLLNDLFGIQARGGCACAGPYGNILLEINNELSLRIRSALVEG 502
Query: 514 YHGVKPGWTRVSFAYYLSGDELRYVLAAIDFVAAHGHRFLPLYAFDWATGDWSFRRAALK 573
Y G+KPGWTR+SFAYY+S +E +++L AI+F+AA+GHRFL LY FDW + +W+F + A K
Sbjct: 503 YLGLKPGWTRLSFAYYISKEEFKFILDAIEFLAAYGHRFLSLYKFDWRSSNWTFSKQAAK 562
Query: 574 RQLMARELLHCHLXXXXXXXXXXXXXEFQTARKTTAAGKVGGDVSADKFEGYLESARRIA 633
A +L +F+ K+ + + KF Y+E+A+RIA
Sbjct: 563 ELSAATGVL------------LGEDLQFKAEDKSDNNKP---EPNHTKFATYMENAKRIA 607
Query: 634 RSLPDTWQATVTVPEGIDPDIVLFRV 659
SLPD Q +++P+G+DPDI++F V
Sbjct: 608 LSLPDINQQIISIPQGVDPDIIIFHV 633
>Os01g0729600 Aminotransferase, class V family protein
Length = 616
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 303/619 (48%), Positives = 368/619 (59%), Gaps = 74/619 (11%)
Query: 49 VEWVRSQLVGAGAEFDTPFGRRPLVYADHTASGRGLRYVEDYVLHHVLPFYGQYHLPCRF 108
+EW+RSQ++GA AEF +PFG R + YADHTASGR LR+VED+V +VLP+YG
Sbjct: 60 LEWLRSQVIGADAEFASPFGTRRVTYADHTASGRCLRFVEDFVQRNVLPYYG-------- 111
Query: 109 SSHAICELDHDVHGDGEVIDAMLVGNTHTEDSYVGSRTTRMARKAASYIKRCVXXXXXXX 168
NTHT DSYVG T+++A +AA Y+KR +
Sbjct: 112 -------------------------NTHTVDSYVGLHTSKLASEAAKYVKRSLGAGA--- 143
Query: 169 XDVALLFCGSGATAAVKRLQEAMGVAAPPGPLRERAAALLRPEERWVVFVGPYEHHSNLL 228
+ LLFCG+G TAA+KRLQE G+A PP LR A +L P ERWVVFVGPYEHHSNLL
Sbjct: 144 -EDVLLFCGTGCTAAIKRLQEVTGMAVPP-TLRSVALDVLPPSERWVVFVGPYEHHSNLL 201
Query: 229 SWRRSXXXXXXXXXX-XXXXXXXXXXXXXXXXPEHADRPMLGSFSACSNVTGVLTDTRAV 287
+WR S PE A RPMLGSFSACSNVTG+ TDTRAV
Sbjct: 202 TWRESLAEVVEIGLRPDDGHLDLDALEAALAAPERAGRPMLGSFSACSNVTGIRTDTRAV 261
Query: 288 ARLLHQHGAFACFDFAASGPYVEIDMRPGEVDGYDAVFLSPHKFVGGPGTPGIXXXXXXX 347
ARLLH +GA+ACFDFA S PYV IDMR GE DGYDAV+LSPHKF+GGPG+PG+
Sbjct: 262 ARLLHGYGAYACFDFACSAPYVGIDMRSGEEDGYDAVYLSPHKFLGGPGSPGVLAMAKRL 321
Query: 348 XXXXXQPPTTCGGGTVAYVNGASERDTVYLAGVEEREDAGTPPIVGKVRAALAFWVKARV 407
P+T GGGTV YV+ DTVY EEREDAGTP I+ KVRAALAF VK V
Sbjct: 322 YRLRRTAPSTSGGGTVVYVSAYG--DTVYCEDTEEREDAGTPAIIQKVRAALAFRVKEWV 379
Query: 408 GRGGAVALRERAHADAAMAWLLGNPNVEVLGNVAAPR----LPIFSFLVF-PGDG--DDR 460
G + RE A+ + +PN+ +L P LP+ SF+V+ P DG D
Sbjct: 380 GEA-CIEAREDHMLALALRRMQASPNLRLLLGGDRPSGGRCLPVLSFVVYSPRDGSEQDE 438
Query: 461 RLPLHGRFVAKLLNDLFGVQARGGCACAGPYGHALLGVGDELSLRIRAAIVRGYHGVKPG 520
R LH RFV KLLNDLFGVQARGGC+CAGPYGH LLG+ + I++A+ +GYHGV+PG
Sbjct: 439 RPQLHCRFVTKLLNDLFGVQARGGCSCAGPYGHRLLGITPARAKAIKSAVEKGYHGVRPG 498
Query: 521 WTRVSFAYYLSGDELRYVLAAIDFVAAHGHRFLPLYAFDWATGDWSFRRAALKRQLMARE 580
WTRVS AYY S E +VL AIDFVA+ GHRFLPLYAFDW TGDW + + R L
Sbjct: 499 WTRVSLAYYTSTREAEFVLDAIDFVASFGHRFLPLYAFDWETGDWEYNH-SFGRVLANNN 557
Query: 581 LLHCHLXXXXXXXXXXXXXEFQTARKTTAAGKVGGDVSADKFEGYLESARRIARSLPDTW 640
+ A ++G+V + D++ Y+ AR +A SL
Sbjct: 558 AI-------------------SNAAAAASSGRVKAE---DEYRSYMAFARSLADSLGGCL 595
Query: 641 QATVT--VPEGIDPDIVLF 657
T VP+GIDP ++ F
Sbjct: 596 DNTPARHVPKGIDPQLLYF 614
>Os12g0190400 Conserved hypothetical protein
Length = 92
Score = 109 bits (272), Expect = 8e-24, Method: Composition-based stats.
Identities = 48/71 (67%), Positives = 54/71 (76%)
Query: 305 SGPYVEIDMRPGEVDGYDAVFLSPHKFVGGPGTPGIXXXXXXXXXXXXQPPTTCGGGTVA 364
SGPYV+IDM+ GEVDGYDAVFLSPHKFVGGPGTPGI QPP+ CGGGTVA
Sbjct: 22 SGPYVKIDMKSGEVDGYDAVFLSPHKFVGGPGTPGILLMNKSLYRLNSQPPSMCGGGTVA 81
Query: 365 YVNGASERDTV 375
YVNG +E ++
Sbjct: 82 YVNGFNEEVSI 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,161,658
Number of extensions: 976978
Number of successful extensions: 1832
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1819
Number of HSP's successfully gapped: 6
Length of query: 659
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 552
Effective length of database: 11,448,903
Effective search space: 6319794456
Effective search space used: 6319794456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)