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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0729600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aminotransferase, class V family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.036) R2 : 0.000343
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.03 (0.0758) R2dN8 : 0.000443 R2N8 : 0.000343
σ : 0.678
deviance : 210.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
203.69 0.665 2.82 -0.0794 0.102 -1.67 -0.323 8.11 0.0265 1.74 46 9 -- --
203.69 0.67 2.84 -0.131 0.0999 1.44 -0.331 -- 0.0251 1.72 47 2 -- --
204.07 0.665 2.82 -0.0662 0.107 -1.98 -- 9.04 0.0261 2.7 46.68 8 -- --
204.07 0.67 2.84 -0.123 0.107 1.49 -- -- 0.0266 2.81 47 2 -- --
204.73 0.666 2.82 -0.0565 -- -2.1 -- 9.22 0.0293 -- 46.78 7 -- --
209.52 0.679 2.84 -0.0789 0.0534 -- -0.525 -- 0.02 0.687 -- -- -- --
210.5 0.679 2.84 -0.0607 0.0827 -- -- -- 0.0214 3.81 -- -- -- --
204.73 0.669 2.84 -0.117 -- 1.45 -- -- 0.0292 -- 46.71 2 -- --
204.46 0.67 2.84 -- 0.104 1.44 -- -- 0.0399 2.82 46.58 2 -- --
210.88 0.679 2.84 -0.0573 -- -- -- -- 0.0236 -- -- -- -- --
210.6 0.679 2.84 -- 0.0815 -- -- -- 0.0282 3.82 -- -- -- --
205.08 0.669 2.84 -- -- 1.41 -- -- 0.0418 -- 46.71 2 -- --
210.96 0.678 2.84 -- -- -- -- -- 0.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.92 atmosphere 995.0 4320 < th dose dependent rect. 14 1
19 199.06 atmosphere 995.0 4320 > th dose independent rect. 12 4
20 199.08 atmosphere 995.0 4320 < th dose independent rect. 14 1
30 199.23 atmosphere 995.0 4320 > th dose independent rect. 10 6
54 199.65 radiation 20.0 10 < th dose independent rect. 12 1
57 199.79 radiation 1.0 90 < th dose independent rect. 10 1
59 199.79 radiation 1.0 90 < th dose dependent rect. 10 1
61 199.81 radiation 40.0 30 < th dose dependent rect. 12 1
65 199.84 temperature 25.0 270 > th dose independent rect. 1 1
67 199.87 radiation 1.0 10 < th dose independent rect. 7 5
69 199.87 radiation 1.0 10 < th dose dependent rect. 7 5
72 199.89 temperature 25.0 90 > th dose independent rect. 1 3
74 199.95 wind 1.0 30 < th dose independent rect. 2 1
86 200.03 temperature 20.0 30 > th dose dependent rect. 2 1
124 200.14 temperature 20.0 30 > th dose independent rect. 2 1
129 200.20 atmosphere 995.0 4320 > th dose independent rect. 6 8
130 200.22 temperature 25.0 90 > th dose dependent rect. 1 4
137 200.35 humidity 80.0 30 > th dose independent rect. 2 1
138 200.40 atmosphere 995.0 4320 > th dose independent rect. 4 10
142 200.47 wind 3.0 30 < th dose dependent rect. 2 1
150 200.53 radiation 1.0 14400 < th dose dependent rect. 3 1
151 200.53 radiation 1.0 4320 < th dose dependent rect. 23 1
152 200.54 radiation 10.0 10 < th dose dependent rect. 10 2
153 200.58 humidity 80.0 30 > th dose dependent rect. 2 1
157 200.63 wind 1.0 30 < th dose independent rect. 11 16
161 200.69 wind 1.0 30 < th dose independent rect. 13 14
163 200.70 wind 1.0 30 < th dose independent rect. 23 4
165 200.71 atmosphere 995.0 4320 > th dose independent rect. 15 1
169 200.73 atmosphere 1005.0 30 > th dose independent rect. 2 1
188 200.85 atmosphere 1000.0 30 > th dose dependent rect. 2 1
191 200.88 wind 9.0 30 < th dose independent rect. 2 1
192 200.88 temperature 10.0 30 > th dose independent rect. 2 1
194 200.88 temperature 30.0 30 < th dose independent rect. 2 1
195 200.88 humidity 50.0 30 > th dose independent rect. 2 1
198 200.88 atmosphere 995.0 30 > th dose independent rect. 2 1
199 200.88 atmosphere 1010.0 30 < th dose independent rect. 2 1
201 200.88 radiation 1.0 30 < th dose independent rect. 2 1
206 200.88 precipitation 0.1 30 < th dose independent rect. 2 1
208 200.88 temperature 10.0 30 > th dose independent rect. 3 23
210 200.88 radiation 1.0 30 < th dose dependent rect. 2 1
215 200.88 precipitation 0.1 30 < th dose dependent rect. 2 1
225 200.93 atmosphere 995.0 4320 > th dose independent rect. 12 9
239 200.99 wind 1.0 30 < th dose dependent rect. 11 16
240 201.00 atmosphere 1015.0 30 < th dose dependent rect. 2 1
242 201.01 wind 1.0 30 < th dose dependent rect. 13 14
264 201.23 wind 1.0 30 < th dose dependent rect. 23 4
304 201.43 radiation 1.0 10 < th dose independent rect. 11 1
338 201.44 temperature 30.0 10 < th dose independent rect. 11 2
341 201.45 wind 1.0 30 > th dose independent rect. 13 22
342 201.45 atmosphere 1010.0 10 > th dose dependent rect. 12 1
461 201.75 wind 1.0 90 > th dose independent rect. 11 1
473 201.84 wind 1.0 10 > th dose independent rect. 11 2
478 201.89 temperature 30.0 30 < th dose independent rect. 3 8
493 201.91 temperature 30.0 30 < th dose dependent rect. 2 1
513 202.00 temperature 15.0 30 > th dose independent rect. 11 16
514 202.01 temperature 10.0 90 > th dose dependent rect. 11 1
516 202.02 wind 9.0 1440 < th dose independent rect. 3 1
517 202.02 temperature 10.0 1440 > th dose independent rect. 3 1
520 202.02 temperature 30.0 1440 < th dose independent rect. 3 1
524 202.02 humidity 50.0 1440 > th dose independent rect. 3 1
533 202.02 atmosphere 995.0 1440 > th dose independent rect. 3 1
534 202.02 radiation 1.0 1440 < th dose independent rect. 3 1
554 202.02 temperature 10.0 1440 > th dose independent rect. 4 23
562 202.03 wind 9.0 90 < th dose independent rect. 11 1
563 202.03 wind 9.0 90 < th dose independent rect. 12 23
564 202.04 temperature 10.0 90 > th dose independent rect. 11 1
565 202.04 atmosphere 995.0 90 > th dose independent rect. 11 1
566 202.04 atmosphere 1015.0 90 < th dose independent rect. 11 1
567 202.04 precipitation 0.1 90 < th dose independent rect. 11 1
569 202.04 temperature 10.0 90 > th dose independent rect. 12 23
570 202.04 precipitation 0.1 90 < th dose dependent rect. 11 1
587 202.09 atmosphere 1015.0 10 < th dose independent rect. 13 22
588 202.10 atmosphere 1000.0 10 < th dose independent rect. 11 1
595 202.10 wind 9.0 30 < th dose independent rect. 11 16
606 202.15 wind 9.0 30 < th dose independent rect. 3 8
607 202.15 temperature 10.0 30 > th dose independent rect. 3 8
609 202.15 humidity 50.0 30 > th dose independent rect. 3 8
610 202.15 atmosphere 995.0 30 > th dose independent rect. 3 8
611 202.15 atmosphere 1015.0 30 < th dose independent rect. 3 8
616 202.16 humidity 90.0 90 < th dose independent rect. 11 1
623 202.19 temperature 20.0 270 > th dose independent rect. 8 4
630 202.22 radiation 20.0 90 > th dose independent rect. 10 3
632 202.23 radiation 1.0 90 > th dose independent rect. 11 1
635 202.26 temperature 10.0 10 > th dose independent rect. 11 2
637 202.26 atmosphere 995.0 10 > th dose independent rect. 11 2
638 202.26 atmosphere 1015.0 10 < th dose independent rect. 11 2
639 202.26 precipitation 0.1 10 < th dose independent rect. 11 2
641 202.26 temperature 10.0 10 > th dose independent rect. 13 22
642 202.26 precipitation 0.1 10 < th dose dependent rect. 11 2
645 202.28 wind 1.0 270 > th dose independent rect. 12 20
655 202.29 precipitation 0.1 30 < th dose independent rect. 3 8
658 202.29 precipitation 0.1 30 < th dose dependent rect. 3 8
665 202.30 wind 1.0 270 > th dose independent rect. 12 10
667 202.31 temperature 10.0 1440 > th dose independent rect. 12 1
673 202.31 wind 9.0 10 < th dose independent rect. 13 22
675 202.31 temperature 10.0 1440 > th dose independent rect. 13 23
696 202.32 temperature 20.0 10 > th dose dependent rect. 2 3
710 202.37 precipitation 0.1 30 < th dose independent rect. 11 16
711 202.37 precipitation 0.1 30 < th dose dependent rect. 11 16
717 202.40 humidity 90.0 10 < th dose independent rect. 11 2
723 202.42 humidity 90.0 90 < th dose dependent rect. 11 1
743 202.48 radiation 30.0 30 < th dose independent rect. 11 16
749 202.49 wind 1.0 30 > th dose independent rect. 2 1
754 202.50 precipitation 0.1 270 < th dose independent rect. 8 4
755 202.50 atmosphere 1010.0 270 < th dose independent rect. 3 16
758 202.50 precipitation 0.1 270 < th dose dependent rect. 8 4
764 202.51 wind 1.0 30 > th dose independent sin 17 NA
766 202.51 radiation 40.0 270 < th dose independent rect. 8 4
769 202.52 temperature 10.0 270 > th dose independent rect. 8 4
770 202.52 atmosphere 995.0 270 > th dose independent rect. 8 4
771 202.52 atmosphere 1015.0 270 < th dose independent rect. 8 4
772 202.52 atmosphere 1010.0 270 < th dose independent rect. 2 18
777 202.52 wind 9.0 30 < th dose dependent rect. 11 16
786 202.55 atmosphere 995.0 30 > th dose independent rect. 3 23
795 202.57 wind 9.0 270 < th dose independent rect. 8 4
809 202.62 temperature 30.0 270 < th dose independent rect. 8 4
811 202.63 temperature 25.0 1440 < th dose independent rect. 1 1
817 202.65 atmosphere 995.0 10 > th dose independent rect. 13 22
836 202.67 precipitation 0.1 30 < th dose independent rect. 13 22
839 202.67 precipitation 0.1 30 < th dose dependent rect. 13 22
850 202.69 radiation 1.0 270 > th dose independent rect. 8 4
852 202.69 radiation 1.0 30 > th dose independent rect. 13 22
855 202.69 wind 9.0 10 < th dose dependent rect. 3 8
893 202.72 humidity 90.0 270 < th dose independent rect. 8 4
908 202.73 atmosphere 995.0 30 > th dose independent rect. 11 16
924 202.76 precipitation 0.1 1440 < th dose independent rect. 12 1
926 202.76 atmosphere 1010.0 10 > th dose dependent sin 22 NA
929 202.76 precipitation 0.1 1440 < th dose dependent rect. 12 1
982 202.85 precipitation 0.1 270 < th dose independent rect. 22 14
984 202.85 precipitation 0.1 270 < th dose dependent rect. 22 14
987 202.86 temperature 10.0 1440 > th dose independent rect. 4 8
991 202.86 temperature 10.0 1440 > th dose independent rect. 12 16