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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0190400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.032) R2 : 0.0808
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.427 (0.0675) R2dN8 : 0.104 R2N8 : 0.0808
σ : 0.604
deviance : 167.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.31 0.584 3.01 0.166 0.015 0.328 0.905 -1.57 0.405 12.6 10.56 245 -- --
157.28 0.584 3.01 0.28 0.0455 0.339 -0.22 -- 0.45 14.2 22.08 179 -- --
155.54 0.581 3.01 0.212 0.0154 0.335 -- -0.809 0.423 0.755 10.57 238 -- --
157.54 0.585 3 0.277 0.0557 0.366 -- -- 0.45 14 22.3 183 -- --
155.54 0.581 3.01 0.215 -- 0.333 -- -0.81 0.423 -- 10.56 236 -- --
160.01 0.593 2.99 0.292 0.286 -- -0.303 -- 0.466 14.1 -- -- -- --
160.35 0.593 2.99 0.284 0.285 -- -- -- 0.464 14 -- -- -- --
157.66 0.585 2.99 0.248 -- 0.396 -- -- 0.44 -- 22.21 180 -- --
159.21 0.588 3 -- 0.0717 0.358 -- -- 0.406 13.7 22.22 203 -- --
165.24 0.601 2.99 0.272 -- -- -- -- 0.457 -- -- -- -- --
162.47 0.596 3 -- 0.28 -- -- -- 0.433 14 -- -- -- --
159.3 0.588 3 -- -- 0.416 -- -- 0.398 -- 22.22 201 -- --
167.18 0.604 3 -- -- -- -- -- 0.427 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.01 wind 3.0 270 > th dose dependent rect. 1 2
2 149.37 atmosphere 1005.0 10 > th dose dependent rect. 16 1
3 149.53 atmosphere 1005.0 10 > th dose independent rect. 16 1
4 149.55 wind 5.0 10 > th dose independent rect. 16 1
7 149.63 humidity 50.0 30 > th dose independent rect. 16 1
8 149.64 temperature 30.0 30 < th dose independent rect. 16 1
11 149.78 radiation 10.0 10 < th dose independent rect. 16 1
13 149.80 wind 5.0 270 > th dose independent rect. 1 2
15 149.86 radiation 20.0 30 < th dose dependent rect. 16 1
16 149.88 wind 5.0 30 > th dose dependent rect. 16 1
24 149.99 humidity 50.0 30 > th dose dependent rect. 16 1
37 150.41 wind 5.0 270 > th dose dependent rect. 1 4
41 150.44 humidity 80.0 10 < th dose independent rect. 16 1
44 150.52 temperature 20.0 10 > th dose independent rect. 16 1
57 150.78 humidity 80.0 30 < th dose independent rect. 1 3
62 150.79 humidity 80.0 30 < th dose dependent rect. 1 3
64 150.82 wind 1.0 10 > th dose independent rect. 16 1
65 150.82 wind 9.0 10 < th dose independent rect. 16 1
66 150.82 temperature 10.0 10 > th dose independent rect. 16 1
69 150.82 atmosphere 1010.0 10 < th dose independent rect. 16 1
73 150.82 precipitation 0.1 10 < th dose independent rect. 16 1
74 150.82 temperature 10.0 10 > th dose independent rect. 17 23
75 150.82 precipitation 0.1 10 < th dose dependent rect. 16 1
79 150.83 humidity 80.0 30 < th dose independent rect. 1 1
86 150.83 humidity 80.0 30 < th dose dependent rect. 1 1
95 150.87 temperature 30.0 30 < th dose dependent rect. 16 1
115 151.08 temperature 10.0 10 > th dose dependent rect. 16 1
116 151.12 radiation 1.0 30 > th dose independent rect. 16 1
125 151.33 atmosphere 1015.0 30 < th dose dependent rect. 16 1
126 151.34 wind 9.0 30 < th dose dependent rect. 16 1
141 151.61 humidity 90.0 10 < th dose dependent rect. 16 1
145 151.66 radiation 1.0 30 > th dose dependent rect. 16 1
150 151.75 temperature 10.0 90 > th dose dependent rect. 7 10
151 151.76 atmosphere 995.0 30 > th dose independent rect. 17 23
155 151.83 temperature 25.0 720 > th dose dependent rect. 24 9
172 151.98 wind 7.0 720 > th dose dependent rect. 19 14
174 152.07 precipitation 0.1 30 < th dose independent rect. 17 23
175 152.07 precipitation 0.1 30 < th dose dependent rect. 17 23
181 152.16 temperature 25.0 720 > th dose independent rect. 2 7
182 152.16 wind 7.0 720 > th dose independent rect. 19 13
183 152.16 wind 7.0 720 > th dose dependent rect. 19 10
189 152.18 precipitation 0.1 720 > th dose independent rect. 21 6
190 152.18 precipitation 0.1 720 > th dose dependent rect. 21 6
191 152.18 wind 7.0 720 > th dose dependent rect. 19 7
196 152.23 precipitation 0.1 720 > th dose independent rect. 22 1
197 152.23 precipitation 0.1 720 > th dose dependent rect. 22 1
198 152.24 temperature 10.0 1440 > th dose independent rect. 17 1
202 152.24 radiation 30.0 1440 < th dose independent rect. 17 1
208 152.24 temperature 10.0 1440 > th dose independent rect. 18 23
212 152.27 precipitation 0.1 720 > th dose independent rect. 19 8
213 152.27 wind 7.0 720 > th dose independent rect. 19 10
216 152.28 precipitation 0.1 720 > th dose independent rect. 17 10
219 152.29 wind 7.0 720 > th dose independent rect. 19 8
332 152.63 radiation 40.0 270 > th dose independent sin 13 NA
340 152.68 temperature 30.0 270 > th dose independent rect. 8 6
342 152.68 temperature 25.0 720 < th dose independent rect. 2 7
365 152.74 temperature 25.0 90 > th dose dependent rect. 21 20
379 152.76 temperature 30.0 30 < th dose independent rect. 17 23
398 152.84 wind 9.0 30 < th dose independent rect. 17 23
405 152.88 radiation 40.0 270 > th dose independent rect. 12 22
421 152.96 temperature 25.0 270 < th dose independent rect. 2 13
442 153.06 humidity 50.0 4320 < th dose independent rect. 9 1
459 153.06 humidity 50.0 4320 < th dose dependent rect. 9 1
487 153.14 humidity 70.0 270 > th dose independent rect. 2 17
490 153.15 temperature 30.0 270 > th dose independent rect. 12 2
491 153.15 atmosphere 1000.0 90 > th dose independent rect. 17 14
493 153.16 wind 7.0 720 > th dose independent rect. 20 2
494 153.16 wind 9.0 90 < th dose independent rect. 7 10
497 153.17 temperature 30.0 90 < th dose independent rect. 17 14
500 153.18 wind 7.0 720 > th dose dependent rect. 20 2
505 153.19 temperature 25.0 90 > th dose dependent rect. 3 14
506 153.20 humidity 50.0 30 > th dose independent rect. 17 23
508 153.21 humidity 60.0 90 > th dose independent rect. 17 14
516 153.24 precipitation 0.1 90 < th dose independent rect. 17 14
517 153.24 precipitation 0.1 90 < th dose dependent rect. 17 14
521 153.25 temperature 10.0 10 > th dose dependent rect. 8 10
523 153.25 temperature 10.0 90 > th dose dependent rect. 17 14
525 153.26 precipitation 0.1 720 > th dose independent sin 14 NA
530 153.30 temperature 25.0 720 > th dose independent rect. 6 3
581 153.48 precipitation 0.1 90 < th dose independent rect. 7 10
583 153.48 precipitation 0.1 90 < th dose dependent rect. 7 10
584 153.49 precipitation 0.1 720 < th dose independent rect. 11 15
585 153.49 precipitation 0.1 720 < th dose dependent rect. 11 15
594 153.52 radiation 40.0 270 > th dose independent rect. 13 2
645 153.57 temperature 10.0 90 > th dose independent rect. 7 10
646 153.57 atmosphere 1015.0 90 < th dose independent rect. 7 10
647 153.57 temperature 10.0 90 > th dose independent rect. 17 14
648 153.57 radiation 40.0 90 < th dose independent rect. 17 14
651 153.58 atmosphere 995.0 90 > th dose independent rect. 7 10
658 153.60 precipitation 0.1 720 < th dose independent sin 15 NA
659 153.60 humidity 70.0 270 > th dose independent rect. 23 22
660 153.60 precipitation 0.1 720 < th dose dependent sin 15 NA
662 153.62 wind 9.0 90 < th dose independent rect. 17 14
673 153.66 radiation 1.0 90 > th dose independent rect. 7 10
685 153.71 radiation 40.0 90 < th dose dependent rect. 17 14
726 153.84 wind 1.0 90 > th dose independent rect. 7 10
731 153.85 radiation 10.0 270 > th dose independent rect. 12 23
738 153.86 precipitation 0.1 720 < th dose independent rect. 14 9
739 153.86 precipitation 0.1 720 > th dose dependent sin 14 NA
741 153.86 precipitation 0.1 720 < th dose dependent rect. 14 9
760 153.89 wind 7.0 720 > th dose dependent rect. 24 9
767 153.90 temperature 25.0 270 > th dose dependent sin 5 NA
782 153.92 temperature 10.0 10 > th dose dependent rect. 18 14
790 153.95 humidity 70.0 30 < th dose independent rect. 16 3
811 153.97 humidity 70.0 270 > th dose independent rect. 9 22
828 153.99 radiation 10.0 270 > th dose dependent rect. 12 22
910 154.07 humidity 70.0 270 > th dose independent rect. 9 10
950 154.11 precipitation 0.1 1440 < th dose independent rect. 17 1
954 154.11 precipitation 0.1 1440 < th dose dependent rect. 17 1
960 154.11 radiation 30.0 270 > th dose dependent rect. 12 21
963 154.12 radiation 10.0 90 < th dose independent rect. 17 16
999 154.18 precipitation 0.1 720 < th dose independent rect. 19 8