Os11g0209900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminotransferase, class V family protein.
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Os11g0209900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminotransferase, class V family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.72 | 0.467 | 3.37 | -0.0359 | 0.124 | 3.41 | -0.414 | -8.63 | 0.14 | 2.87 | 48.07 | 42 | -- | -- |
| 106.97 | 0.485 | 3.34 | 0.103 | 0.089 | 0.236 | -0.422 | -- | 0.126 | 2.44 | 48.46 | 100 | -- | -- |
| 98.44 | 0.462 | 3.38 | -0.0483 | 0.127 | 3.94 | -- | -9.85 | 0.145 | 3 | 48.29 | 35 | -- | -- |
| 105.14 | 0.478 | 3.33 | 0.0815 | 0.124 | 0.6 | -- | -- | 0.142 | 2.54 | 49.79 | 60 | -- | -- |
| 99.33 | 0.464 | 3.38 | -0.0346 | -- | 3.79 | -- | -9.63 | 0.145 | -- | 48.33 | 35 | -- | -- |
| 107.2 | 0.485 | 3.34 | 0.116 | 0.0803 | -- | -0.47 | -- | 0.125 | 2.51 | -- | -- | -- | -- |
| 107.95 | 0.487 | 3.34 | 0.129 | 0.0807 | -- | -- | -- | 0.128 | 1.31 | -- | -- | -- | -- |
| 105.81 | 0.479 | 3.33 | 0.0755 | -- | 0.573 | -- | -- | 0.142 | -- | 50 | 39 | -- | -- |
| 105.15 | 0.478 | 3.33 | -- | 0.125 | 0.638 | -- | -- | 0.13 | 2.33 | 49.54 | 48 | -- | -- |
| 108.35 | 0.486 | 3.33 | 0.132 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 108.39 | 0.487 | 3.34 | -- | 0.083 | -- | -- | -- | 0.113 | 1.37 | -- | -- | -- | -- |
| 105.99 | 0.48 | 3.33 | -- | -- | 0.59 | -- | -- | 0.131 | -- | 49.94 | 39 | -- | -- |
| 108.82 | 0.487 | 3.34 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.21 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 2 | 91.41 | humidity | 60.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 3 | 91.65 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 6 | 92.19 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 7 | 92.24 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 9 | 92.45 | temperature | 30.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 10 | 92.65 | wind | 5.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 15 | 94.71 | wind | 7.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 26 | 95.63 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 38 | 96.79 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 41 | 97.00 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 42 | 97.04 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 44 | 97.08 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 45 | 97.09 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 50 | 97.15 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 54 | 97.18 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 57 | 97.18 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 60 | 97.18 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 61 | 97.18 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 63 | 97.18 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 68 | 97.18 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 69 | 97.18 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 70 | 97.18 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 71 | 97.18 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 76 | 97.18 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 77 | 97.19 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 80 | 97.20 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 100 | 97.23 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 117 | 97.29 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 123 | 97.38 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 167 | 97.67 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 173 | 97.75 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 186 | 98.30 | humidity | 50.0 | 30 | < th | dose dependent | rect. | 16 | 20 |
| 220 | 98.40 | radiation | 20.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 249 | 98.84 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 250 | 98.88 | wind | 3.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 257 | 98.99 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 262 | 98.99 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 1 |
| 263 | 98.99 | temperature | 10.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 264 | 98.99 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 322 | 99.29 | humidity | 50.0 | 30 | < th | dose dependent | sin | 12 | NA |
| 361 | 99.48 | humidity | 50.0 | 30 | < th | dose independent | rect. | 16 | 20 |
| 407 | 99.95 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 415 | 100.01 | wind | 9.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 417 | 100.05 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 420 | 100.12 | humidity | 50.0 | 30 | < th | dose dependent | no | NA | NA |
| 602 | 100.31 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 634 | 100.55 | humidity | 50.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 635 | 100.58 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 637 | 100.58 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 651 | 100.66 | humidity | 50.0 | 10 | > th | dose independent | sin | 12 | NA |
| 669 | 100.81 | humidity | 50.0 | 30 | < th | dose independent | sin | 12 | NA |
| 672 | 100.91 | radiation | 40.0 | 720 | < th | dose independent | rect. | 15 | 8 |
| 680 | 101.02 | wind | 1.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 748 | 101.18 | humidity | 60.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 774 | 101.19 | temperature | 10.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 775 | 101.19 | temperature | 10.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 777 | 101.20 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 817 | 101.26 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 838 | 101.30 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 855 | 101.43 | temperature | 10.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 856 | 101.43 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 857 | 101.43 | temperature | 10.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 897 | 101.53 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 927 | 101.58 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 931 | 101.58 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 932 | 101.59 | humidity | 50.0 | 30 | < th | dose independent | no | NA | NA |