BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0207100 Os11g0207100|AK065129
(933 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0207100 Conserved hypothetical protein 988 0.0
Os11g0207000 Conserved hypothetical protein 952 0.0
Os06g0126000 Conserved hypothetical protein 314 2e-85
>Os11g0207100 Conserved hypothetical protein
Length = 933
Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/602 (81%), Positives = 492/602 (81%)
Query: 332 SLNMRTPGKSAPYEPGTCAKRLTHYMYHQQNRPQDNNIEYWRNFVNEYFSPNAKKRWCVS 391
SLNMRTPGKSAPYEPGTCAKRLTHYMYHQQNRPQDNNIEYWRNFVNEYFSPNAKKRWCVS
Sbjct: 332 SLNMRTPGKSAPYEPGTCAKRLTHYMYHQQNRPQDNNIEYWRNFVNEYFSPNAKKRWCVS 391
Query: 392 LYGSGRQTTGVFPQDVWHCEICNRKPGRGFETTVEVLPRLCQIKYASGTLEELLYVDMPR 451
LYGSGRQTTGVFPQDVWHCEICNRKPGRGFETTVEVLPRLCQIKYASGTLEELLYVDMPR
Sbjct: 392 LYGSGRQTTGVFPQDVWHCEICNRKPGRGFETTVEVLPRLCQIKYASGTLEELLYVDMPR 451
Query: 452 ESQNASGQIVLDYTKAIQESVFEQLRVVREGHLRIVFNPDLKIASWEFCARRHEELIPRR 511
ESQNASGQIVLDYTKAIQESVFEQLRVVREGHLRIVFNPDLKIASWEFCARRHEELIPRR
Sbjct: 452 ESQNASGQIVLDYTKAIQESVFEQLRVVREGHLRIVFNPDLKIASWEFCARRHEELIPRR 511
Query: 512 SIIPQVSQLGAVVQKYQSAVQNSTNLSTQDMQNNCNSFVACARQLAKALEVPLVNDLGYT 571
SIIPQVSQLGAVVQKYQSAVQNSTNLSTQDMQNNCNSFVACARQLAKALEVPLVNDLGYT
Sbjct: 512 SIIPQVSQLGAVVQKYQSAVQNSTNLSTQDMQNNCNSFVACARQLAKALEVPLVNDLGYT 571
Query: 572 KRYVRCLQIAEVVNCMKDLIDYSRQNGSGPIASLHSFPRRTXXXXXXXXXXXXXXXXXXX 631
KRYVRCLQIAEVVNCMKDLIDYSRQNGSGPIASLHSFPRRT
Sbjct: 572 KRYVRCLQIAEVVNCMKDLIDYSRQNGSGPIASLHSFPRRTSSGGVNPQQSQQQQPEEQQ 631
Query: 632 XXXXXXXXXXXXAAPMTGVQASASANADVTSNNXXXXXXXXXXXXXXVVGLLQGSMNSRQ 691
AAPMTGVQASASANADVTSNN VVGLLQGSMNSRQ
Sbjct: 632 SIPQSSNQSGQNAAPMTGVQASASANADVTSNNSLSCAPSTSAPSPSVVGLLQGSMNSRQ 691
Query: 692 DHPMSSANGPYTSGNSAAIPKVXXXXXXXXXXXXXXXXXXXXXXXXXMMPAPQNTNQLSS 751
DHPMSSANGPYTSGNSAAIPKV MMPAPQNTNQLSS
Sbjct: 692 DHPMSSANGPYTSGNSAAIPKVNSTTSLQSTPSTSFPSPVPTTSNNNMMPAPQNTNQLSS 751
Query: 752 PTASSNLPPMQPPATRPQEPDPNESQSSVQRILQDLMMSPQMNGVGQLGNDMKRPNGLTS 811
PTASSNLPPMQPPATRPQEPDPNESQSSVQRILQDLMMSPQMNGVGQLGNDMKRPNGLTS
Sbjct: 752 PTASSNLPPMQPPATRPQEPDPNESQSSVQRILQDLMMSPQMNGVGQLGNDMKRPNGLTS 811
Query: 812 SVNGVNCLVGNAVTNNSXXXXXXXXXXXXXXPNHAASGLRTAIANNAMAISGRMGMNHSA 871
SVNGVNCLVGNAVTNNS PNHAASGLRTAIANNAMAISGRMGMNHSA
Sbjct: 812 SVNGVNCLVGNAVTNNSGMGGMGFGAMGGLGPNHAASGLRTAIANNAMAISGRMGMNHSA 871
Query: 872 HDLSQLGQLXXXXXXXXXXXXXXXXXXXXXXXXXXDLGNQLLSGLRAANSFNNLQYDWKP 931
HDLSQLGQL DLGNQLLSGLRAANSFNNLQYDWKP
Sbjct: 872 HDLSQLGQLQQQQQHQHQHQHQHQQQQQQQQQQQHDLGNQLLSGLRAANSFNNLQYDWKP 931
Query: 932 SQ 933
SQ
Sbjct: 932 SQ 933
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/256 (49%), Positives = 127/256 (49%)
Query: 1 MVPSGPPNPMGPGQPVGAASLLRTXXXXXXXXXXXXXXXXXXXXXXXXFSSLVSPRTQFG 60
MVPSGPPNPMGPGQPVGAASLLRT FSSLVSPRTQFG
Sbjct: 1 MVPSGPPNPMGPGQPVGAASLLRTSSSLLSGGQQGMGSGGGMLPSQSPFSSLVSPRTQFG 60
Query: 61 AXXXXXXXXXXXXXXXRPFGNXXXXXXXXXXXXXXXXXXNTLQQQRXXXXXXXXXXXXXX 120
A RPFGN NTLQQQR
Sbjct: 61 ANGLLGGGSNVSSLLNRPFGNGGHMLGPGSMPGGGGLPMNTLQQQRGGLDGAGDLVGAGG 120
Query: 121 XXXXXXXXXXXXXLGNQLGSDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYNXXX 180
LGNQLGSDN SYN
Sbjct: 121 SDSLSFPSSSQVSLGNQLGSDNLHPPPQHQQQQQHLDAMQDLQHQHQHQQQLPMSYNQQQ 180
Query: 181 XXXXXXXXXXATVKLENGGSTGGVKLEPQMGQPDQNSTAQMMRNASNVKIEPPQLQALRS 240
ATVKLENGGSTGGVKLEPQMGQPDQNSTAQMMRNASNVKIEPPQLQALRS
Sbjct: 181 LPPQPPQQPQATVKLENGGSTGGVKLEPQMGQPDQNSTAQMMRNASNVKIEPPQLQALRS 240
Query: 241 LSAVKMEQQSSDPSAF 256
LSAVKMEQQSSDPSAF
Sbjct: 241 LSAVKMEQQSSDPSAF 256
>Os11g0207000 Conserved hypothetical protein
Length = 914
Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/599 (79%), Positives = 483/599 (80%), Gaps = 12/599 (2%)
Query: 335 MRTPGKSAPYEPGTCAKRLTHYMYHQQNRPQDNNIEYWRNFVNEYFSPNAKKRWCVSLYG 394
MRTPGKSAPYEPGTCAKRLTHYMYHQQNRPQDNNIEYWRNFVNEYFSPNAKKRWCVSLYG
Sbjct: 328 MRTPGKSAPYEPGTCAKRLTHYMYHQQNRPQDNNIEYWRNFVNEYFSPNAKKRWCVSLYG 387
Query: 395 SGRQTTGVFPQDVWHCEICNRKPGRGFETTVEVLPRLCQIKYASGTLEELLYVDMPRESQ 454
SGRQTTGVFPQDVWHCEICNRKPGRGFETTVEVLPRLCQIKYASGTLEELLYVDMPRESQ
Sbjct: 388 SGRQTTGVFPQDVWHCEICNRKPGRGFETTVEVLPRLCQIKYASGTLEELLYVDMPRESQ 447
Query: 455 NASGQIVLDYTKAIQESVFEQLRVVREGHLRIVFNPDLKIASWEFCARRHEELIPRRSII 514
NASGQIVLDYTKAIQESVFEQLRVVREGHLRIVFNPDLKIASWEFCARRHEELIPRRSII
Sbjct: 448 NASGQIVLDYTKAIQESVFEQLRVVREGHLRIVFNPDLKIASWEFCARRHEELIPRRSII 507
Query: 515 PQVSQLGAVVQKYQSAVQNSTNLSTQDMQNNCNSFVACARQLAKALEVPLVNDLGYTKRY 574
PQVSQLGAVVQKYQSAVQNSTNLSTQDMQNNCNSFVACARQLAKALEVPLVNDLGYTKRY
Sbjct: 508 PQVSQLGAVVQKYQSAVQNSTNLSTQDMQNNCNSFVACARQLAKALEVPLVNDLGYTKRY 567
Query: 575 VRCLQIAEVVNCMKDLIDYSRQNGSGPIASLHSFPRRTXXXXXXXXXXXXXXXXXXXXXX 634
VRCLQIAEVVNCMKDLIDYSRQNGSGPIASLHSFPRRT
Sbjct: 568 VRCLQIAEVVNCMKDLIDYSRQNGSGPIASLHSFPRRT-SSGVSPHQSQQQQPEEQQSIP 626
Query: 635 XXXXXXXXXAAPMTGVQASASANADVTSNNXXXXXXXXXXXXXXVVGLLQGSMNSRQDHP 694
AAPMTGVQASASANADVTSNN VVGLLQGSMNSRQDHP
Sbjct: 627 QSSNQSGQNAAPMTGVQASASANADVTSNNSLSCAPSTSAPSPSVVGLLQGSMNSRQDHP 686
Query: 695 MSSANGPYTSGNSAAIPKVXXXXXXXXXXXXXXXXXXXXXXXXXMMPAPQNTNQLSSPTA 754
MSSANGPYTSGNSAAIPKV MMPAPQ+TNQLSSPT
Sbjct: 687 MSSANGPYTSGNSAAIPKVNSTTSLQSNPSTSFPSPMPTTSNNNMMPAPQSTNQLSSPTT 746
Query: 755 SSNLPPMQPPATRPQEPDPNESQSSVQRILQDLMMSPQMNGVGQLGNDMKRPNGLTSSVN 814
SSNLPPMQPPATRPQEP+PNESQSSVQRILQDLMMSPQMNG+GQLGNDMKRPNGLTSSVN
Sbjct: 747 SSNLPPMQPPATRPQEPEPNESQSSVQRILQDLMMSPQMNGIGQLGNDMKRPNGLTSSVN 806
Query: 815 GVNCLVGNAVTNNSXXXXXXXXXXXXXXPNHAASGLRTAIANNAMAISGRMGMNHSAHDL 874
GVNCLVGNAVTNNS PNHAASGLRTA+ NNAMAISGRMGMNHSAHDL
Sbjct: 807 GVNCLVGNAVTNNSGMGGMGFGAMGGLGPNHAASGLRTAMVNNAMAISGRMGMNHSAHDL 866
Query: 875 SQLGQLXXXXXXXXXXXXXXXXXXXXXXXXXXDLGNQLLSGLRAANSFNNLQYDWKPSQ 933
SQ DLGNQLL+GLRAANSFNNLQYDWKPSQ
Sbjct: 867 SQ-----------LGQLQQQQQHQQQQQQQQHDLGNQLLNGLRAANSFNNLQYDWKPSQ 914
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 121/257 (47%), Gaps = 2/257 (0%)
Query: 1 MVPSGPPNPMGPGQPVGAASLLRTXXXXXXXXXXXXXXXXXXXXXXXX-FSSLVSPRTQF 59
M+PSGP NPMGPGQPVGAA+ L FSSLVSPRTQF
Sbjct: 1 MMPSGPLNPMGPGQPVGAAASLLRTSSSLLSGGQQGMGSGGGMIPSQSPFSSLVSPRTQF 60
Query: 60 GAXXXXXXXXXXXXXXXRPFGNXXXXXXXXXXXXXXXXXXNTLQQQRXXXXXXXXXXXXX 119
GA RPFGN NTLQQQR
Sbjct: 61 GANGLLGGGSNVSSLLNRPFGNGGHMLGPGLMPGGGGIPMNTLQQQRGGLDGAGDLVGVG 120
Query: 120 XXXXXXXXXXXXXXLGNQLGSDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYNXX 179
LGNQLGSDN SYN
Sbjct: 121 GSDPLSFPSSSQVSLGNQLGSDNLHQPPQHQQQQQQLDAMHDLQQQQHHQQLPM-SYNQQ 179
Query: 180 XXXXXXXXXXXATVKLENGGSTGGVKLEPQMGQPDQNSTAQMMRNASNVKIEPPQLQALR 239
ATVKLENGGSTGGVKLEPQMGQPDQNS+AQMMR+ASNVKIEP QLQALR
Sbjct: 180 HLPPQPPQQPQATVKLENGGSTGGVKLEPQMGQPDQNSSAQMMRHASNVKIEPQQLQALR 239
Query: 240 SLSAVKMEQQSSDPSAF 256
SLSAVKMEQ +SDPSAF
Sbjct: 240 SLSAVKMEQPTSDPSAF 256
>Os06g0126000 Conserved hypothetical protein
Length = 775
Score = 314 bits (804), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 192/275 (69%), Gaps = 5/275 (1%)
Query: 343 PYEPGTCAKRLTHYMYHQQNRPQDNNIEYWRNFVNEYFSPNAKKRWCVSLYGSGRQTTGV 402
P E G C++RL Y+YH+++RP++N I YWR ++EYF+P A++RWCVS Y +G
Sbjct: 188 PVENGLCSRRLKQYLYHKRHRPENNPITYWRKLIDEYFAPRARERWCVSSYEKRGNPSGA 247
Query: 403 FPQ---DVWHCEICNRKPGRGFETTVEVLPRLCQIKYASGTLEELLYVDMPRESQNASGQ 459
P D W C+ICN G+G+E T E+LPRLCQI++ G ++E L++DM E + +G
Sbjct: 248 VPHTAPDSWRCDICNTHGGKGYEATYEILPRLCQIRFDHGVIDEYLFLDMANEFRLPNGL 307
Query: 460 IVLDYTKAIQESVFEQLRVVREGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQ 519
++L++TK +Q+S++E + V+ EG LRI+F P+LKI SWEFC+RRH+E I RR + PQV+
Sbjct: 308 MLLEHTKVVQKSIYEHMHVIHEGQLRIIFTPELKIMSWEFCSRRHDEYITRRFLSPQVAH 367
Query: 520 LGAVVQKYQSAVQNS--TNLSTQDMQNNCNSFVACARQLAKALEVPLVNDLGYTKRYVRC 577
L V QKYQ+ S +S D QN CN FV +RQLAK ++ +N+ G +KRYVRC
Sbjct: 368 LLQVAQKYQTVATESGPAGVSNSDAQNICNMFVTASRQLAKNIDHHTLNEHGLSKRYVRC 427
Query: 578 LQIAEVVNCMKDLIDYSRQNGSGPIASLHSFPRRT 612
LQI+EVVN MKDLI++S +N GPI L S+P++T
Sbjct: 428 LQISEVVNHMKDLIEFSHKNKLGPIEGLKSYPKQT 462
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,290,947
Number of extensions: 719399
Number of successful extensions: 2649
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2637
Number of HSP's successfully gapped: 7
Length of query: 933
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 823
Effective length of database: 11,292,261
Effective search space: 9293530803
Effective search space used: 9293530803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 161 (66.6 bits)