Os06g0126000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0126000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.08 | 0.17 | 12.6 | -0.178 | 0.282 | -0.443 | -0.297 | 0.0207 | 0.117 | 14.8 | 21.66 | 67 | -- | -- |
| 13.08 | 0.168 | 12.6 | -0.182 | 0.282 | -0.44 | -0.291 | -- | 0.116 | 14.8 | 21.74 | 68 | -- | -- |
| 13.27 | 0.17 | 12.6 | -0.237 | 0.287 | -0.432 | -- | -0.295 | 0.101 | 15.1 | 21.87 | 71 | -- | -- |
| 13.34 | 0.17 | 12.6 | -0.181 | 0.292 | -0.459 | -- | -- | 0.119 | 15.1 | 21.8 | 73 | -- | -- |
| 16.45 | 0.189 | 12.6 | -0.28 | -- | -0.182 | -- | -0.192 | 0.0628 | -- | 20.82 | 187 | -- | -- |
| 16.12 | 0.188 | 12.6 | -0.268 | 0.0982 | -- | -0.455 | -- | 0.0425 | 13.3 | -- | -- | -- | -- |
| 16.86 | 0.192 | 12.6 | -0.283 | 0.112 | -- | -- | -- | 0.0408 | 14.9 | -- | -- | -- | -- |
| 15.2 | 0.182 | 12.6 | -0.191 | -- | -0.273 | -- | -- | 0.0853 | -- | 23.81 | 1145 | -- | -- |
| 14.17 | 0.175 | 12.6 | -- | 0.318 | -0.52 | -- | -- | 0.148 | 15.1 | 21.43 | 73 | -- | -- |
| 17.57 | 0.196 | 12.6 | -0.288 | -- | -- | -- | -- | 0.038 | -- | -- | -- | -- | -- |
| 18.96 | 0.204 | 12.6 | -- | 0.117 | -- | -- | -- | 0.0723 | 15 | -- | -- | -- | -- |
| 16.2 | 0.187 | 12.6 | -- | -- | -0.312 | -- | -- | 0.117 | -- | 23.15 | 1145 | -- | -- |
| 19.75 | 0.207 | 12.6 | -- | -- | -- | -- | -- | 0.0699 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.59 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 19 |
| 3 | 10.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 11 | 10.99 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 33 | 11.21 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 19 |
| 46 | 11.28 | radiation | 20 | 270 | < th | dose dependent | rect. | 4 | 19 |
| 64 | 11.38 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 19 |
| 66 | 11.39 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 19 |
| 85 | 11.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 11 |
| 97 | 11.52 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 18 |
| 138 | 11.65 | radiation | 20 | 270 | < th | dose independent | rect. | 4 | 19 |
| 163 | 11.74 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 20 |
| 217 | 11.90 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 220 | 11.90 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 251 | 11.97 | humidity | 60 | 90 | > th | dose dependent | sin | 21 | NA |
| 257 | 11.98 | radiation | 1 | 270 | < th | dose independent | sin | 22 | NA |
| 265 | 11.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 268 | 11.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 19 |
| 274 | 11.99 | radiation | 1 | 270 | < th | dose dependent | sin | 23 | NA |
| 278 | 11.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 300 | 12.03 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 19 |
| 315 | 12.06 | humidity | 60 | 90 | > th | dose dependent | rect. | 11 | 13 |
| 330 | 12.08 | humidity | 50 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 331 | 12.08 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 13 |
| 433 | 12.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 447 | 12.22 | humidity | 60 | 270 | > th | dose dependent | rect. | 11 | 11 |
| 535 | 12.33 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 15 |
| 540 | 12.33 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 10 |
| 549 | 12.34 | radiation | 1 | 270 | > th | dose independent | sin | 23 | NA |
| 570 | 12.35 | humidity | 50 | 270 | > th | dose dependent | rect. | 13 | 9 |
| 587 | 12.37 | humidity | 90 | 270 | < th | dose independent | rect. | 9 | 9 |
| 588 | 12.37 | radiation | 1 | 270 | > th | dose independent | rect. | 8 | 11 |
| 614 | 12.38 | radiation | 10 | 270 | < th | dose dependent | rect. | 10 | 12 |
| 623 | 12.39 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 10 |
| 637 | 12.40 | temperature | 10 | 90 | > th | dose dependent | sin | 22 | NA |
| 645 | 12.41 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 9 |
| 662 | 12.42 | humidity | 70 | 270 | > th | dose independent | rect. | 11 | 11 |
| 675 | 12.42 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 12 |
| 702 | 12.44 | radiation | 10 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 773 | 12.48 | humidity | 50 | 270 | > th | dose independent | rect. | 14 | 9 |
| 791 | 12.49 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 10 |
| 883 | 12.53 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 13 |
| 904 | 12.54 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 10 |
| 943 | 12.56 | radiation | 1 | 270 | < th | dose independent | rect. | 12 | 10 |
| 952 | 12.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 9 |