BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0126000 Os06g0126000|AK100438
         (775 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0126000  Conserved hypothetical protein                     1269   0.0  
Os11g0207100  Conserved hypothetical protein                      316   4e-86
Os11g0207000  Conserved hypothetical protein                      315   6e-86

>Os06g0126000 Conserved hypothetical protein
          Length = 775

 Score = 1269 bits (3284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/775 (81%), Positives = 634/775 (81%)

Query: 1   MSGAPCSNLGLVPRDMHGSIPISTTNSSGPSIGVSSLVTDANSSLSGGAQLQPIIDGPIV 60
           MSGAPCSNLGLVPRDMHGSIPISTTNSSGPSIGVSSLVTDANSSLSGGAQLQPIIDGPIV
Sbjct: 1   MSGAPCSNLGLVPRDMHGSIPISTTNSSGPSIGVSSLVTDANSSLSGGAQLQPIIDGPIV 60

Query: 61  QQSPPQEQMQKRRSSSVTSQPVIDAAGALHAQKKSRVDIRXXXXXXXXXXXXXXXXXXXX 120
           QQSPPQEQMQKRRSSSVTSQPVIDAAGALHAQKKSRVDIR                    
Sbjct: 61  QQSPPQEQMQKRRSSSVTSQPVIDAAGALHAQKKSRVDIRQDDILQHNLIQQLLQGQSSL 120

Query: 121 XXXXXXNPQIQAXXXXXXXXXXXXXXXXXXXXPFSQIQQSQVGIXXXXXXXXXXXXXGMQ 180
                 NPQIQA                    PFSQIQQSQVGI             GMQ
Sbjct: 121 HLQGQQNPQIQALIHQHKLAQIQQQQQHQMLQPFSQIQQSQVGIPRQPQLRPPLAQPGMQ 180

Query: 181 LAGPVRTPVENGLCSRRLKQYLYHKRHRPENNPITYWRKLIDEYFAPRARERWCVSSYEK 240
           LAGPVRTPVENGLCSRRLKQYLYHKRHRPENNPITYWRKLIDEYFAPRARERWCVSSYEK
Sbjct: 181 LAGPVRTPVENGLCSRRLKQYLYHKRHRPENNPITYWRKLIDEYFAPRARERWCVSSYEK 240

Query: 241 RGNPSGAVPHTAPDSWRCDICNTHGGKGYEATYEILPRLCQIRFDHGVIDEYLFLDMANE 300
           RGNPSGAVPHTAPDSWRCDICNTHGGKGYEATYEILPRLCQIRFDHGVIDEYLFLDMANE
Sbjct: 241 RGNPSGAVPHTAPDSWRCDICNTHGGKGYEATYEILPRLCQIRFDHGVIDEYLFLDMANE 300

Query: 301 FRLPNGLMLLEHTKVVQKSIYEHMHVIHEGQLRIIFTPELKIMSWEFCSRRHDEYITRRF 360
           FRLPNGLMLLEHTKVVQKSIYEHMHVIHEGQLRIIFTPELKIMSWEFCSRRHDEYITRRF
Sbjct: 301 FRLPNGLMLLEHTKVVQKSIYEHMHVIHEGQLRIIFTPELKIMSWEFCSRRHDEYITRRF 360

Query: 361 LSPQVAHLLQVAQKYQTVATESGPAGVSNSDAQNICNMFVTASRQLAKNIDHHTLNEHGL 420
           LSPQVAHLLQVAQKYQTVATESGPAGVSNSDAQNICNMFVTASRQLAKNIDHHTLNEHGL
Sbjct: 361 LSPQVAHLLQVAQKYQTVATESGPAGVSNSDAQNICNMFVTASRQLAKNIDHHTLNEHGL 420

Query: 421 SKRYVRCLQISEVVNHMKDLIEFSHKNKLGPIEGLKSYPKQTAAKLPVQNMHEPKQLMAA 480
           SKRYVRCLQISEVVNHMKDLIEFSHKNKLGPIEGLKSYPKQTAAKLPVQNMHEPKQLMAA
Sbjct: 421 SKRYVRCLQISEVVNHMKDLIEFSHKNKLGPIEGLKSYPKQTAAKLPVQNMHEPKQLMAA 480

Query: 481 AGLPNDQTNLKAMGVKTEMNTHANETHGIGPIGNGPQNAAALNNYQNPXXXXXXXXXXXX 540
           AGLPNDQTNLKAMGVKTEMNTHANETHGIGPIGNGPQNAAALNNYQNP            
Sbjct: 481 AGLPNDQTNLKAMGVKTEMNTHANETHGIGPIGNGPQNAAALNNYQNPIGNGLQNAAALN 540

Query: 541 XXXXXXRSSVANQSLLQQEASSMFKGPTAMHNGIQLEASRSFRGPNQVHLAQFQHPASFQ 600
                 RSSVANQSLLQQEASSMFKGPTAMHNGIQLEASRSFRGPNQVHLAQFQHPASFQ
Sbjct: 541 NYQNILRSSVANQSLLQQEASSMFKGPTAMHNGIQLEASRSFRGPNQVHLAQFQHPASFQ 600

Query: 601 QPMPQQSSLQGLGVSPXXXXXXXXXXXXEAKNTNNRVLAXXXXXXXXXHAPANXXXXXXX 660
           QPMPQQSSLQGLGVSP            EAKNTNNRVLA         HAPAN       
Sbjct: 601 QPMPQQSSLQGLGVSPQYQQHVLHQLLQEAKNTNNRVLAQQQQQQQLQHAPANSGLASGG 660

Query: 661 XXXXXXXXXXDHMNNNGAVKGGTPMVTTGPSSVINNTASILPXXXXXXXXXXXNPQVXXX 720
                     DHMNNNGAVKGGTPMVTTGPSSVINNTASILP           NPQV   
Sbjct: 661 TAITGSAASGDHMNNNGAVKGGTPMVTTGPSSVINNTASILPSRSNSFKSVSSNPQVAAA 720

Query: 721 XXXXXXXXXXXXTPKADALHELDDLDNLGNLISTELEESGLFLGDQAGGGYSWNM 775
                       TPKADALHELDDLDNLGNLISTELEESGLFLGDQAGGGYSWNM
Sbjct: 721 AGGGIGSGGHAATPKADALHELDDLDNLGNLISTELEESGLFLGDQAGGGYSWNM 775



>Os11g0207100 Conserved hypothetical protein
          Length = 933

 Score =  316 bits (810), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 135/277 (48%), Positives = 194/277 (70%), Gaps = 5/277 (1%)

Query: 188 PVENGLCSRRLKQYLYHKRHRPENNPITYWRKLIDEYFAPRARERWCVSSYEKRGNPSGA 247
           P E G C++RL  Y+YH+++RP++N I YWR  ++EYF+P A++RWCVS Y      +G 
Sbjct: 343 PYEPGTCAKRLTHYMYHQQNRPQDNNIEYWRNFVNEYFSPNAKKRWCVSLYGSGRQTTGV 402

Query: 248 VPHTAPDSWRCDICNTHGGKGYEATYEILPRLCQIRFDHGVIDEYLFLDMANEFRLPNGL 307
            P    D W C+ICN   G+G+E T E+LPRLCQI++  G ++E L++DM  E +  +G 
Sbjct: 403 FPQ---DVWHCEICNRKPGRGFETTVEVLPRLCQIKYASGTLEELLYVDMPRESQNASGQ 459

Query: 308 MLLEHTKVVQKSIYEHMHVIHEGQLRIIFTPELKIMSWEFCSRRHDEYITRRFLSPQVAH 367
           ++L++TK +Q+S++E + V+ EG LRI+F P+LKI SWEFC+RRH+E I RR + PQV+ 
Sbjct: 460 IVLDYTKAIQESVFEQLRVVREGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQ 519

Query: 368 LLQVAQKYQTVATESGPAGVSNSDAQNICNMFVTASRQLAKNIDHHTLNEHGLSKRYVRC 427
           L  V QKYQ+    S    +S  D QN CN FV  +RQLAK ++   +N+ G +KRYVRC
Sbjct: 520 LGAVVQKYQSAVQNS--TNLSTQDMQNNCNSFVACARQLAKALEVPLVNDLGYTKRYVRC 577

Query: 428 LQISEVVNHMKDLIEFSHKNKLGPIEGLKSYPKQTAA 464
           LQI+EVVN MKDLI++S +N  GPI  L S+P++T++
Sbjct: 578 LQIAEVVNCMKDLIDYSRQNGSGPIASLHSFPRRTSS 614



>Os11g0207000 Conserved hypothetical protein
          Length = 914

 Score =  315 bits (808), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 135/279 (48%), Positives = 195/279 (69%), Gaps = 5/279 (1%)

Query: 188 PVENGLCSRRLKQYLYHKRHRPENNPITYWRKLIDEYFAPRARERWCVSSYEKRGNPSGA 247
           P E G C++RL  Y+YH+++RP++N I YWR  ++EYF+P A++RWCVS Y      +G 
Sbjct: 336 PYEPGTCAKRLTHYMYHQQNRPQDNNIEYWRNFVNEYFSPNAKKRWCVSLYGSGRQTTGV 395

Query: 248 VPHTAPDSWRCDICNTHGGKGYEATYEILPRLCQIRFDHGVIDEYLFLDMANEFRLPNGL 307
            P    D W C+ICN   G+G+E T E+LPRLCQI++  G ++E L++DM  E +  +G 
Sbjct: 396 FPQ---DVWHCEICNRKPGRGFETTVEVLPRLCQIKYASGTLEELLYVDMPRESQNASGQ 452

Query: 308 MLLEHTKVVQKSIYEHMHVIHEGQLRIIFTPELKIMSWEFCSRRHDEYITRRFLSPQVAH 367
           ++L++TK +Q+S++E + V+ EG LRI+F P+LKI SWEFC+RRH+E I RR + PQV+ 
Sbjct: 453 IVLDYTKAIQESVFEQLRVVREGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQ 512

Query: 368 LLQVAQKYQTVATESGPAGVSNSDAQNICNMFVTASRQLAKNIDHHTLNEHGLSKRYVRC 427
           L  V QKYQ+    S    +S  D QN CN FV  +RQLAK ++   +N+ G +KRYVRC
Sbjct: 513 LGAVVQKYQSAVQNS--TNLSTQDMQNNCNSFVACARQLAKALEVPLVNDLGYTKRYVRC 570

Query: 428 LQISEVVNHMKDLIEFSHKNKLGPIEGLKSYPKQTAAKL 466
           LQI+EVVN MKDLI++S +N  GPI  L S+P++T++ +
Sbjct: 571 LQIAEVVNCMKDLIDYSRQNGSGPIASLHSFPRRTSSGV 609



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,297,016
Number of extensions: 857874
Number of successful extensions: 1951
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1941
Number of HSP's successfully gapped: 3
Length of query: 775
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 666
Effective length of database: 11,344,475
Effective search space: 7555420350
Effective search space used: 7555420350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)