BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0126000 Os06g0126000|AK100438
(775 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62090.1 | chr5:24935221-24938540 REVERSE LENGTH=817 373 e-103
AT4G25515.1 | chr4:13028219-13031463 FORWARD LENGTH=686 356 3e-98
AT4G25520.1 | chr4:13032450-13035803 REVERSE LENGTH=749 343 2e-94
AT1G43850.1 | chr1:16617872-16621596 FORWARD LENGTH=878 301 1e-81
>AT5G62090.1 | chr5:24935221-24938540 REVERSE LENGTH=817
Length = 816
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/344 (51%), Positives = 240/344 (69%), Gaps = 6/344 (1%)
Query: 188 PVENGLCSRRLKQYLYHKRHRPENNPITYWRKLIDEYFAPRARERWCVSSYEKRGNPS-G 246
P EN +C+RRL QYLYH+R RP + I YWRK + EYF+PRA++RWC+S Y+ G+ + G
Sbjct: 286 PYENSVCARRLMQYLYHQRQRPSESSIVYWRKFVTEYFSPRAKKRWCLSHYDNVGHSALG 345
Query: 247 AVPHTAPDSWRCDICNTHGGKGYEATYEILPRLCQIRFDHGVIDEYLFLDMANEFRLPNG 306
P A D W+CD+C + G+G+EAT+++LPRL +I+F GV+DE L+L + +E R +G
Sbjct: 346 VSPQAATDEWQCDLCGSKSGRGFEATFDVLPRLNEIKFASGVLDELLYLGVPSERRYGSG 405
Query: 307 LMLLEHTKVVQKSIYEHMHVIHEGQLRIIFTPELKIMSWEFCSRRHDEYITRRFLSPQVA 366
+M+LE+ K VQ+S+YEH+ V+ EG LRIIF+ ELKI+SWEFC+RRH+E + RR ++PQV
Sbjct: 406 IMVLEYGKAVQESVYEHIRVVREGHLRIIFSQELKILSWEFCTRRHEELLPRRLVAPQVN 465
Query: 367 HLLQVAQKYQTVATESGPAGVSNSDAQNICNMFVTASRQLAKNIDHHTLNEHGLSKRYVR 426
LLQVA+K Q+ +SG G+ D Q NM + A RQLAK+++ H+LN+ G SKRYVR
Sbjct: 466 QLLQVAEKCQSTIDQSGSDGIHQQDLQANSNMVMAAGRQLAKSLESHSLNDLGFSKRYVR 525
Query: 427 CLQISEVVNHMKDLIEFSHKNKLGPIEGLKSYPKQTAAKLPVQNMHEPKQLMAAAGLPND 486
CLQISEVV+ MKD+I+F K+GPIE LKSYP + A P M E +QL AA GLP D
Sbjct: 526 CLQISEVVSSMKDMIDFCRDQKVGPIEALKSYPYRMKAGKP--QMQEMEQLAAARGLPPD 583
Query: 487 QTNL-KAMGVKTE-MNTHANETHGIGPIGNGPQNAA-ALNNYQN 527
+ +L K M ++ +N N G G + Q AA AL NYQ+
Sbjct: 584 RNSLNKLMALRNSGINIPMNNMSGQGSLPGSAQAAAFALTNYQS 627
>AT4G25515.1 | chr4:13028219-13031463 FORWARD LENGTH=686
Length = 685
Score = 356 bits (913), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 175/352 (49%), Positives = 235/352 (66%), Gaps = 9/352 (2%)
Query: 184 PVRTPVENGLCSRRLKQYLYHKRHRPENNPITYWRKLIDEYFAPRARERWCVSSYEKRGN 243
P P E G+C+R+L YLYH + RP N ITYWRK + EYF+PRA++R C+S YE G+
Sbjct: 151 PNVRPYEVGVCARKLMMYLYHLQQRPAENCITYWRKFVAEYFSPRAKQRLCLSQYESVGH 210
Query: 244 PS-GAVPHTAPDSWRCDICNTHGGKGYEATYEILPRLCQIRFDHGVIDEYLFLDMANEFR 302
+ G P APD W+CD+C T GKG+EAT+++L RL +I+F G+IDE L+LD E R
Sbjct: 211 HALGMFPQAAPDMWQCDLCGTKSGKGFEATFDVLARLIEIKFASGIIDELLYLDHPRENR 270
Query: 303 LPNGLMLLEHTKVVQKSIYEHMHVIHEGQLRIIFTPELKIMSWEFCSRRHDEYITRRFLS 362
PNGLM+LE+ K VQ++++E V+ EG LRIIF+P+LKI+SWEFC+RRH+E + RR ++
Sbjct: 271 FPNGLMMLEYRKAVQETVHEQFRVVREGHLRIIFSPDLKILSWEFCARRHEELLLRRLIA 330
Query: 363 PQVAHLLQVAQKYQTVATESGPAGVSNSDAQNICNMFVTASRQLAKNIDHHTLNEHGLSK 422
PQV LLQVAQK Q+ +ESG GVS D Q+ NM + A RQLAK ++ +LN+ G K
Sbjct: 331 PQVNQLLQVAQKCQSTISESGSQGVSQQDIQSNSNMVLGAGRQLAKFMELQSLNDLGYPK 390
Query: 423 RYVRCLQISEVVNHMKDLIEFSHKNKLGPIEGLKSYPKQTA-AKLPVQNMHEPKQL---M 478
RY+R LQISEVV MKDL+ F+ ++K+GP+EGLK +QTA KL Q M E +Q
Sbjct: 391 RYIRTLQISEVVKSMKDLMNFTGEHKVGPLEGLKQLLEQTATVKLQRQKMQEMEQFGNSG 450
Query: 479 AAAGLPNDQTNLKAMGVK-TEMNTHANETH---GIGPIGNGPQNAAALNNYQ 526
A +G Q L + + + N ++N H G G + PQ AAL NYQ
Sbjct: 451 AMSGPAQAQMTLSSGTMSGSTANNNSNNHHQIVGRGAMNGSPQATAALTNYQ 502
>AT4G25520.1 | chr4:13032450-13035803 REVERSE LENGTH=749
Length = 748
Score = 343 bits (881), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 157/296 (53%), Positives = 208/296 (70%), Gaps = 2/296 (0%)
Query: 184 PVRTPVENGLCSRRLKQYLYHKRHRPENNPITYWRKLIDEYFAPRARERWCVSSYEKRGN 243
P P E G+C+R+L YLYH + RP N ITYWRK + EYF+PRA++R C+S YE G+
Sbjct: 179 PNVRPYEVGVCARKLMMYLYHLQQRPAENCITYWRKFVAEYFSPRAKQRLCLSQYESAGH 238
Query: 244 PS-GAVPHTAPDSWRCDICNTHGGKGYEATYEILPRLCQIRFDHGVIDEYLFLDMANEFR 302
+ G P APD W+CD+C T GKG+EAT+++L RL +I+F G+IDE L+LD E R
Sbjct: 239 HALGMFPQAAPDMWQCDLCGTKSGKGFEATFDVLARLIEIKFASGIIDELLYLDHPRENR 298
Query: 303 LPNGLMLLEHTKVVQKSIYEHMHVIHEGQLRIIFTPELKIMSWEFCSRRHDEYITRRFLS 362
PNGLM+LE+ K VQ++++E V+ EG LRIIF+ +LKI+SWEFC+RRH+E + RR ++
Sbjct: 299 FPNGLMMLEYRKAVQETVHEQFRVVREGHLRIIFSQDLKILSWEFCARRHEELLLRRLIA 358
Query: 363 PQVAHLLQVAQKYQTVATESGPAGVSNSDAQNICNMFVTASRQLAKNIDHHTLNEHGLSK 422
PQV LLQVAQK Q+ +ESG GVS D Q+ NM + A RQLAK ++ +LN+ G K
Sbjct: 359 PQVNQLLQVAQKCQSTISESGSEGVSQQDLQSNSNMVLGAGRQLAKFMELQSLNDLGYPK 418
Query: 423 RYVRCLQISEVVNHMKDLIEFSHKNKLGPIEGLKSYPKQTA-AKLPVQNMHEPKQL 477
RY+R LQISEVV MKDL+ F+ + K+GPIEGLK +QT KL Q M E +Q
Sbjct: 419 RYIRTLQISEVVKSMKDLMNFTGEQKIGPIEGLKRLLEQTVTVKLQKQKMQEMEQF 474
>AT1G43850.1 | chr1:16617872-16621596 FORWARD LENGTH=878
Length = 877
Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 196/284 (69%), Gaps = 12/284 (4%)
Query: 184 PVRTPVENGLCSRRLKQYLYHKRHRPENNPITYWRKLIDEYFAPRARERWCVSSYEKRGN 243
P++ E G+ ++RL QY+Y ++HRPE+N I +WRK + EYFAP A++RWCVS Y
Sbjct: 296 PLKPVYEPGMGAQRLTQYMYRQQHRPEDNNIEFWRKFVAEYFAPNAKKRWCVSMYGSGRQ 355
Query: 244 PSGAVPHTAPDSWRCDICNTHGGKGYEATYEILPRLCQIRFDHGVIDEYLFLDMANEFRL 303
+G P D W C+ICN G+G+EAT E+LPRL +I+++ G ++E L++DM E +
Sbjct: 356 TTGVFPQ---DVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPRESQN 412
Query: 304 PNGLMLLEHTKVVQKSIYEHMHVIHEGQLRIIFTPELKIMSWEFCSRRHDEYITRRFLSP 363
+G ++LE+ K Q+S++EH+ V+ +GQLRI+F+P+LKI SWEFC+RRH+E I RR L P
Sbjct: 413 SSGQIVLEYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELIPRRLLIP 472
Query: 364 QVAHL----LQVAQKYQTVATESGPAGVSNSDAQNICNMFVTASRQLAKNIDHHTLNEHG 419
QV+ L + Q Q T+S + + QN CNMFV ++RQLAK ++ +N+ G
Sbjct: 473 QVSQLGSAAQKYQQAAQNATTDS-----ALPELQNNCNMFVASARQLAKALEVPLVNDLG 527
Query: 420 LSKRYVRCLQISEVVNHMKDLIEFSHKNKLGPIEGLKSYPKQTA 463
+KRYVRCLQISEVVN MKDLI++S + + GPIE L +P++T
Sbjct: 528 YTKRYVRCLQISEVVNSMKDLIDYSRETRTGPIESLAKFPRRTG 571
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,827,904
Number of extensions: 526058
Number of successful extensions: 1172
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1167
Number of HSP's successfully gapped: 4
Length of query: 775
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 669
Effective length of database: 8,200,473
Effective search space: 5486116437
Effective search space used: 5486116437
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)