BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0192500 Os11g0192500|J023013C05
(229 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0192500 Conserved hypothetical protein 354 3e-98
Os11g0193800 Conserved hypothetical protein 344 3e-95
Os11g0194450 338 2e-93
Os11g0191800 Conserved hypothetical protein 338 2e-93
Os11g0191700 288 3e-78
Os11g0194475 288 3e-78
>Os11g0192500 Conserved hypothetical protein
Length = 229
Score = 354 bits (908), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 169/183 (92%), Positives = 169/183 (92%)
Query: 28 IGSYDPKAFCSKTTDVASCLKVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAES 87
IGSYDPKAFCSKTTDVASCLKVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAES
Sbjct: 28 IGSYDPKAFCSKTTDVASCLKVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAES 87
Query: 88 MXXXXXXXXXXXXXXFFEQWKGDEAITTKTPPGKCLLSCNKTIGEVNAILTCGHTYMEDR 147
M FFEQWKGDEAITTKTPPGKCLLSCNKTIGEVNAILTCGHTYMEDR
Sbjct: 88 MIATTTAANPANIATFFEQWKGDEAITTKTPPGKCLLSCNKTIGEVNAILTCGHTYMEDR 147
Query: 148 PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLS 207
PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLS
Sbjct: 148 PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLS 207
Query: 208 ETG 210
ETG
Sbjct: 208 ETG 210
>Os11g0193800 Conserved hypothetical protein
Length = 228
Score = 344 bits (883), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 164/183 (89%), Positives = 167/183 (91%)
Query: 28 IGSYDPKAFCSKTTDVASCLKVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAES 87
IGSYDPKAFCSKTTDVASCL+VFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAES
Sbjct: 27 IGSYDPKAFCSKTTDVASCLRVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAES 86
Query: 88 MXXXXXXXXXXXXXXFFEQWKGDEAITTKTPPGKCLLSCNKTIGEVNAILTCGHTYMEDR 147
M FF QWK DEA+TTKTPPGKCLLSCNKTIGEV+AILTCGHTYMEDR
Sbjct: 87 MIATTTAADPKISAPFFPQWKRDEAMTTKTPPGKCLLSCNKTIGEVDAILTCGHTYMEDR 146
Query: 148 PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLS 207
PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLS
Sbjct: 147 PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLS 206
Query: 208 ETG 210
ETG
Sbjct: 207 ETG 209
>Os11g0194450
Length = 229
Score = 338 bits (866), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/183 (87%), Positives = 166/183 (90%)
Query: 28 IGSYDPKAFCSKTTDVASCLKVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAES 87
IGSYDPKAFCSKTTD+ASCL+VFPTLPDIVTKAQDN+ELYKRLVRYCSFKTYEATSLAES
Sbjct: 28 IGSYDPKAFCSKTTDIASCLRVFPTLPDIVTKAQDNKELYKRLVRYCSFKTYEATSLAES 87
Query: 88 MXXXXXXXXXXXXXXFFEQWKGDEAITTKTPPGKCLLSCNKTIGEVNAILTCGHTYMEDR 147
M FF QWK DEA+TTKTPPGKCLLSCNKTIGEV+AILTCGHTYMEDR
Sbjct: 88 MIATTTAADPKISAPFFPQWKRDEAMTTKTPPGKCLLSCNKTIGEVDAILTCGHTYMEDR 147
Query: 148 PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLS 207
PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGE LLATKFNYIWSLLDLM+AVLPEYLS
Sbjct: 148 PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEALLATKFNYIWSLLDLMKAVLPEYLS 207
Query: 208 ETG 210
ETG
Sbjct: 208 ETG 210
>Os11g0191800 Conserved hypothetical protein
Length = 229
Score = 338 bits (866), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/183 (87%), Positives = 166/183 (90%)
Query: 28 IGSYDPKAFCSKTTDVASCLKVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAES 87
IGSYDPKAFCSKTTD+ASCL+VFPTLPDIVTKAQDN+ELYKRLVRYCSFKTYEATSLAES
Sbjct: 28 IGSYDPKAFCSKTTDIASCLRVFPTLPDIVTKAQDNKELYKRLVRYCSFKTYEATSLAES 87
Query: 88 MXXXXXXXXXXXXXXFFEQWKGDEAITTKTPPGKCLLSCNKTIGEVNAILTCGHTYMEDR 147
M FF QWK DEA+TTKTPPGKCLLSCNKTIGEV+AILTCGHTYMEDR
Sbjct: 88 MIATTTAADPKISAPFFPQWKRDEAMTTKTPPGKCLLSCNKTIGEVDAILTCGHTYMEDR 147
Query: 148 PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLS 207
PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGE LLATKFNYIWSLLDLM+AVLPEYLS
Sbjct: 148 PPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEALLATKFNYIWSLLDLMKAVLPEYLS 207
Query: 208 ETG 210
ETG
Sbjct: 208 ETG 210
>Os11g0191700
Length = 216
Score = 288 bits (736), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 136/182 (74%), Positives = 150/182 (82%)
Query: 29 GSYDPKAFCSKTTDVASCLKVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAESM 88
GSYDPKAFCSKTTDVASCL+V+PTLPD V K+QDN++LY RL YC K YEA+SLAESM
Sbjct: 16 GSYDPKAFCSKTTDVASCLRVYPTLPDDVAKSQDNEQLYTRLYDYCGVKIYEASSLAESM 75
Query: 89 XXXXXXXXXXXXXXFFEQWKGDEAITTKTPPGKCLLSCNKTIGEVNAILTCGHTYMEDRP 148
FF QWKGDEAITTKT PGKCLLSCNKTIG+V+AI TCG+TYMEDRP
Sbjct: 76 IATTTAADPVIIATFFPQWKGDEAITTKTHPGKCLLSCNKTIGDVDAIQTCGNTYMEDRP 135
Query: 149 PIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLSE 208
P+IHQNLTVLFHGGHP LCKSGC + SSSEGE +LATKF YIW+LLDL+EAVLPEYLSE
Sbjct: 136 PMIHQNLTVLFHGGHPLPLCKSGCSERSSSEGEAILATKFKYIWTLLDLLEAVLPEYLSE 195
Query: 209 TG 210
T
Sbjct: 196 TA 197
>Os11g0194475
Length = 214
Score = 288 bits (736), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 136/182 (74%), Positives = 150/182 (82%)
Query: 29 GSYDPKAFCSKTTDVASCLKVFPTLPDIVTKAQDNQELYKRLVRYCSFKTYEATSLAESM 88
GSYDPKAFCSKTTDVASCL+V+PTLPD V K+QDN++LY RL YC K YEA+SLAESM
Sbjct: 14 GSYDPKAFCSKTTDVASCLRVYPTLPDDVAKSQDNEQLYTRLYDYCGVKIYEASSLAESM 73
Query: 89 XXXXXXXXXXXXXXFFEQWKGDEAITTKTPPGKCLLSCNKTIGEVNAILTCGHTYMEDRP 148
FF QWKGDEAITTKT PGKCLLSCNKTIG+V+AI TCG+TYMEDRP
Sbjct: 74 IATTTAADPVIIATFFPQWKGDEAITTKTHPGKCLLSCNKTIGDVDAIQTCGNTYMEDRP 133
Query: 149 PIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEVLLATKFNYIWSLLDLMEAVLPEYLSE 208
P+IHQNLTVLFHGGHP LCKSGC + SSSEGE +LATKF YIW+LLDL+EAVLPEYLSE
Sbjct: 134 PMIHQNLTVLFHGGHPLPLCKSGCSERSSSEGEAILATKFKYIWTLLDLLEAVLPEYLSE 193
Query: 209 TG 210
T
Sbjct: 194 TA 195
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,593,364
Number of extensions: 241857
Number of successful extensions: 426
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 6
Length of query: 229
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 132
Effective length of database: 11,971,043
Effective search space: 1580177676
Effective search space used: 1580177676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)