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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0192500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0294) R2 : 0.0272
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.221 (0.0619) R2dN8 : 0.0352 R2N8 : 0.0272
σ : 0.554
deviance : 140.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
132.1 0.54 2.97 -0.406 0.164 0.528 -0.0605 -0.938 0.229 0.413 59 355 -- --
132.57 0.536 2.97 -0.377 0.171 0.434 0.0174 -- 0.22 0.392 60 366 -- --
132.12 0.535 2.97 -0.404 0.164 0.527 -- -0.908 0.229 0.436 59.14 355 -- --
132.48 0.536 2.97 -0.381 0.149 0.441 -- -- 0.224 0.632 59.86 456 -- --
133.22 0.538 2.97 -0.414 -- 0.518 -- -0.979 0.235 -- 59.01 507 -- --
135.84 0.546 2.98 -0.335 0.179 -- 0.0349 -- 0.184 21.7 -- -- -- --
135.84 0.546 2.98 -0.336 0.179 -- -- -- 0.184 21.7 -- -- -- --
133.79 0.539 2.96 -0.374 -- 0.411 -- -- 0.228 -- 59.91 505 -- --
136.25 0.544 2.96 -- 0.141 0.385 -- -- 0.262 0.19 60 455 -- --
137.75 0.548 2.97 -0.334 -- -- -- -- 0.184 -- -- -- -- --
138.82 0.551 2.97 -- 0.178 -- -- -- 0.222 21.6 -- -- -- --
137.45 0.546 2.96 -- -- 0.37 -- -- 0.264 -- 60 507 -- --
140.7 0.554 2.97 -- -- -- -- -- 0.221 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.12 temperature 20.0 90 > th dose dependent rect. 2 1
2 126.60 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 126.65 wind 3.0 30 < th dose dependent rect. 2 1
5 126.68 temperature 20.0 30 > th dose independent rect. 2 1
6 126.68 atmosphere 1005.0 30 > th dose independent rect. 2 1
8 126.71 wind 3.0 30 < th dose independent rect. 2 1
14 126.79 humidity 80.0 30 > th dose independent rect. 2 1
17 126.80 radiation 1.0 4320 < th dose dependent rect. 3 1
22 126.84 precipitation 0.1 30 < th dose independent rect. 3 23
23 126.84 precipitation 0.1 30 < th dose dependent rect. 3 23
25 126.88 temperature 10.0 30 > th dose independent rect. 2 1
27 126.88 temperature 30.0 30 < th dose independent rect. 2 1
28 126.88 humidity 50.0 30 > th dose independent rect. 2 1
31 126.88 atmosphere 995.0 30 > th dose independent rect. 2 1
32 126.88 atmosphere 1010.0 30 < th dose independent rect. 2 1
34 126.88 radiation 1.0 30 < th dose independent rect. 2 1
39 126.88 precipitation 0.1 30 < th dose independent rect. 2 1
40 126.88 temperature 10.0 30 > th dose independent rect. 3 23
41 126.88 humidity 50.0 30 > th dose independent rect. 3 23
42 126.88 humidity 50.0 30 > th dose dependent rect. 2 1
46 126.88 radiation 1.0 30 < th dose dependent rect. 2 1
52 126.88 precipitation 0.1 30 < th dose dependent rect. 2 1
57 126.90 wind 9.0 1440 < th dose independent rect. 3 1
58 126.90 temperature 10.0 1440 > th dose independent rect. 3 1
61 126.90 temperature 30.0 1440 < th dose independent rect. 3 1
65 126.90 humidity 50.0 1440 > th dose independent rect. 3 1
74 126.90 atmosphere 995.0 1440 > th dose independent rect. 3 1
75 126.90 radiation 1.0 1440 < th dose independent rect. 3 1
95 126.90 temperature 10.0 1440 > th dose independent rect. 4 23
115 127.10 atmosphere 1015.0 30 < th dose dependent rect. 2 1
123 127.34 temperature 30.0 30 < th dose dependent rect. 2 1
124 127.38 wind 3.0 10 > th dose independent rect. 3 1
126 127.39 wind 5.0 90 > th dose independent rect. 3 1
127 127.39 wind 5.0 90 > th dose dependent rect. 3 1
128 127.39 wind 3.0 10 > th dose dependent rect. 3 2
135 127.42 atmosphere 995.0 30 > th dose independent rect. 3 23
198 128.02 humidity 60.0 30 > th dose independent rect. 12 14
201 128.13 temperature 30.0 30 < th dose independent rect. 12 14
214 128.72 wind 9.0 30 < th dose independent rect. 3 23
223 129.02 temperature 10.0 270 > th dose dependent rect. 14 13
225 129.09 temperature 25.0 1440 > th dose dependent rect. 22 2
227 129.12 wind 5.0 10 > th dose dependent rect. 3 5
232 129.22 humidity 90.0 90 < th dose independent rect. 2 1
235 129.32 temperature 25.0 270 > th dose independent rect. 22 8
246 129.43 temperature 25.0 270 > th dose independent rect. 23 5
299 129.44 humidity 50.0 30 > th dose dependent rect. 12 14
301 129.45 temperature 25.0 1440 > th dose dependent rect. 22 4
311 129.52 temperature 25.0 270 > th dose independent rect. 14 16
369 129.88 temperature 25.0 1440 > th dose independent rect. 22 4
370 129.88 wind 7.0 10 > th dose independent rect. 21 8
376 129.88 wind 7.0 10 > th dose dependent rect. 21 8
397 129.94 temperature 30.0 10 < th dose dependent rect. 13 13
419 130.06 temperature 25.0 1440 < th dose independent rect. 1 1
426 130.09 humidity 60.0 10 < th dose independent rect. 16 1
444 130.14 temperature 25.0 1440 < th dose independent rect. 22 5
447 130.14 atmosphere 995.0 10 > th dose dependent rect. 12 14
464 130.20 humidity 60.0 10 < th dose dependent rect. 16 1
469 130.21 temperature 20.0 10 > th dose dependent rect. 15 14
509 130.36 temperature 25.0 1440 > th dose independent rect. 22 2
545 130.50 wind 1.0 30 > th dose independent rect. 12 14
549 130.51 precipitation 0.1 30 > th dose independent rect. 3 1
555 130.51 precipitation 0.1 30 > th dose dependent rect. 3 1
561 130.52 precipitation 0.1 10 < th dose independent rect. 2 10
565 130.52 precipitation 0.1 10 < th dose dependent rect. 2 10
568 130.53 humidity 70.0 90 < th dose dependent rect. 18 1
574 130.54 temperature 25.0 270 < th dose independent rect. 18 12
581 130.56 atmosphere 1005.0 10 > th dose independent rect. 2 9
583 130.56 atmosphere 995.0 10 > th dose dependent rect. 2 10
589 130.58 temperature 20.0 90 > th dose dependent sin 13 NA
592 130.59 temperature 30.0 30 < th dose independent rect. 3 23
594 130.60 atmosphere 1005.0 10 > th dose independent rect. 2 4
600 130.62 atmosphere 1005.0 10 > th dose dependent rect. 2 4
607 130.64 temperature 25.0 270 > th dose independent sin 13 NA
612 130.66 wind 9.0 10 < th dose independent rect. 2 10
613 130.66 temperature 20.0 270 > th dose dependent sin 15 NA
619 130.67 radiation 10.0 10 > th dose dependent rect. 16 1
623 130.68 radiation 10.0 10 > th dose independent rect. 16 1
624 130.68 temperature 25.0 720 > th dose independent rect. 16 11
640 130.72 temperature 25.0 270 < th dose independent sin 13 NA
644 130.72 wind 9.0 10 < th dose independent rect. 12 14
654 130.74 temperature 10.0 10 > th dose independent rect. 2 10
656 130.74 atmosphere 995.0 10 > th dose independent rect. 2 10
657 130.74 atmosphere 1015.0 10 < th dose independent rect. 2 10
659 130.74 temperature 10.0 10 > th dose independent rect. 12 14
663 130.77 temperature 10.0 720 > th dose dependent rect. 15 4
698 130.84 temperature 25.0 720 > th dose dependent sin 12 NA
701 130.85 precipitation 0.1 10 < th dose independent rect. 12 14
702 130.85 atmosphere 1005.0 30 > th dose dependent rect. 12 10
704 130.85 precipitation 0.1 10 < th dose dependent rect. 12 14
706 130.86 wind 5.0 10 < th dose independent rect. 16 1
708 130.86 atmosphere 1005.0 90 > th dose independent rect. 12 13
719 130.88 humidity 60.0 90 < th dose independent sin 15 NA
723 130.88 temperature 20.0 10 > th dose dependent sin 13 NA
727 130.89 temperature 25.0 270 > th dose independent rect. 18 12
730 130.89 temperature 25.0 720 > th dose dependent rect. 17 15
731 130.90 humidity 60.0 90 > th dose independent sin 14 NA
776 130.94 wind 1.0 10 < th dose independent rect. 5 1
783 130.95 temperature 30.0 720 < th dose independent rect. 3 8
808 130.99 temperature 30.0 10 < th dose independent rect. 2 10
835 131.03 temperature 10.0 1440 > th dose independent rect. 3 10
838 131.03 atmosphere 995.0 1440 > th dose independent rect. 3 10
840 131.03 temperature 10.0 1440 > th dose independent rect. 13 14
884 131.09 temperature 30.0 30 < th dose independent rect. 16 10
912 131.12 humidity 60.0 90 < th dose independent rect. 15 4
933 131.12 radiation 40.0 10 < th dose dependent rect. 12 14
937 131.13 humidity 50.0 30 > th dose independent rect. 2 10
945 131.14 atmosphere 995.0 10 > th dose independent rect. 12 14
956 131.16 humidity 70.0 90 < th dose independent rect. 18 1
967 131.17 atmosphere 1005.0 10 < th dose independent rect. 16 1