BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0176200 Os11g0176200|AK121851
(1003 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0176200 Similar to HUA enhancer 2 1943 0.0
Os12g0279000 Similar to ATP-dependent RNA helicase DOB1 (mR... 275 1e-73
Os02g0739000 DEAD/DEAH box helicase, N-terminal domain cont... 235 1e-61
Os03g0213400 Similar to RNA helicase 97 5e-20
Os03g0743800 74 5e-13
>Os11g0176200 Similar to HUA enhancer 2
Length = 1003
Score = 1943 bits (5033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 944/1003 (94%), Positives = 944/1003 (94%)
Query: 1 MEEVENTSKRKAPESEHAAAVSGEHXXXXXXXDAAAKRRNLSRSCIHEVAVPKGYAAAKD 60
MEEVENTSKRKAPESEHAAAVSGEH DAAAKRRNLSRSCIHEVAVPKGYAAAKD
Sbjct: 1 MEEVENTSKRKAPESEHAAAVSGEHPPPPPPPDAAAKRRNLSRSCIHEVAVPKGYAAAKD 60
Query: 61 EAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIA 120
EAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIA
Sbjct: 61 EAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIA 120
Query: 121 MSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAML 180
MSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAML
Sbjct: 121 MSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAML 180
Query: 181 YRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWI 240
YRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWI
Sbjct: 181 YRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWI 240
Query: 241 CNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQSNQ 300
CNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQSNQ
Sbjct: 241 CNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQSNQ 300
Query: 301 VDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMS 360
VDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMS
Sbjct: 301 VDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMS 360
Query: 361 KLDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXX 420
KLDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSG
Sbjct: 361 KLDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKELV 420
Query: 421 XXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIASGEYIQMSGRAGRR 480
FQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIASGEYIQMSGRAGRR
Sbjct: 421 ELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIASGEYIQMSGRAGRR 480
Query: 481 GKDIRGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHVI 540
GKDIRGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHVI
Sbjct: 481 GKDIRGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHVI 540
Query: 541 RNSFHQFQYEKALPEVVQKITSLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEMI 600
RNSFHQFQYEKALPEVVQKITSLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEMI
Sbjct: 541 RNSFHQFQYEKALPEVVQKITSLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEMI 600
Query: 601 RPERALLYLVPGRLVKVRDGSTDXXXXXXXXXXXXXXQSGTLPPALSASRGNNYIVDTLL 660
RPERALLYLVPGRLVKVRDGSTD QSGTLPPALSASRGNNYIVDTLL
Sbjct: 601 RPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPQSGTLPPALSASRGNNYIVDTLL 660
Query: 661 HCXXXXXXXXXXXKPLPPRPGEKGEMHXXXXXXXXXXXXXXXRINIPPDLRPPEARQNIL 720
HC KPLPPRPGEKGEMH RINIPPDLRPPEARQNIL
Sbjct: 661 HCSSSSNENGSRSKPLPPRPGEKGEMHVVPVPLPLLSGLSSVRINIPPDLRPPEARQNIL 720
Query: 721 FAVQELGKRYPQGLPKLDPIKDMGLQEPELVELVHKLDDLEQKLCSHPLHKSDQSEQQLS 780
FAVQELGKRYPQGLPKLDPIKDMGLQEPELVELVHKLDDLEQKLCSHPLHKSDQSEQQLS
Sbjct: 721 FAVQELGKRYPQGLPKLDPIKDMGLQEPELVELVHKLDDLEQKLCSHPLHKSDQSEQQLS 780
Query: 781 WYQRKAELNHEIQMLKSKMRDSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGRAACLI 840
WYQRKAELNHEIQMLKSKMRDSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGRAACLI
Sbjct: 781 WYQRKAELNHEIQMLKSKMRDSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGRAACLI 840
Query: 841 DTGDELLITELMFNGTFNDLDHHQVASLASCFIPCEKSSEQIRLRSELSTPMMQLQEAAR 900
DTGDELLITELMFNGTFNDLDHHQVASLASCFIPCEKSSEQIRLRSELSTPMMQLQEAAR
Sbjct: 841 DTGDELLITELMFNGTFNDLDHHQVASLASCFIPCEKSSEQIRLRSELSTPMMQLQEAAR 900
Query: 901 KIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLARR 960
KIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLARR
Sbjct: 901 KIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLARR 960
Query: 961 LDEFLNQLKAAAQAVGEVNLENKFGAASDSLRRGIMFANSLYL 1003
LDEFLNQLKAAAQAVGEVNLENKFGAASDSLRRGIMFANSLYL
Sbjct: 961 LDEFLNQLKAAAQAVGEVNLENKFGAASDSLRRGIMFANSLYL 1003
>Os12g0279000 Similar to ATP-dependent RNA helicase DOB1 (mRNA transport
regulator MTR4)
Length = 250
Score = 275 bits (703), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 161/200 (80%), Gaps = 4/200 (2%)
Query: 44 SCIHEVAVPKGY--AAAKDEAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNESV 101
+C+H+V+ P+GY +A ++G A AK +PFQLDPFQ+ +I CL+ ESV
Sbjct: 44 ACVHDVSYPEGYDPSAPATHLLNGV--GGAEGAGPAKTFPFQLDPFQAEAIRCLDNGESV 101
Query: 102 LVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVT 161
+VSAHTSAGKT +A YAIAMS R++QRVIYTSP+KALSNQKYRE +EFSDVGLMTGDVT
Sbjct: 102 MVSAHTSAGKTVVALYAIAMSLRNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVT 161
Query: 162 LQPNATCLVMTTEILRAMLYRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 221
++PNA+CLVMTTEI R+M Y+GSEV++EVAW+IFDE+HYM+DRERGVVWEESI+ P
Sbjct: 162 IEPNASCLVMTTEIWRSMQYKGSEVMREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNS 221
Query: 222 KMVFLSATMSNATEFAEWIC 241
+ VFLSAT+ NA EFA+W+
Sbjct: 222 RFVFLSATVPNAKEFADWVA 241
>Os02g0739000 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1179
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 167/496 (33%), Positives = 239/496 (48%), Gaps = 59/496 (11%)
Query: 73 HGEMAKAYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYT 132
+ E+A Y F +D FQ ++I R SV+VSA TS+GKT IAE A + +R+ YT
Sbjct: 159 YNELAGIYDFPIDKFQRLAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRLFYT 218
Query: 133 SPLKALSNQKYRELSQEFSD--VGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEV---- 186
+PLKALSNQK+R+ F D VGL+TGD + +A L+MTTEILR MLY+ +
Sbjct: 219 TPLKALSNQKFRDFRNTFGDHNVGLLTGDSAINKDAQILIMTTEILRNMLYQSVGMAASE 278
Query: 187 --IKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLH 244
+ +V ++ DE+HY+ D RG VWEE++I+ P ++++ LSAT++N E A WI +H
Sbjct: 279 GRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPDELAGWIGQIH 338
Query: 245 KQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQSNQVDGR 304
+ +V + RP PL + LV DG+ ++ N F S+
Sbjct: 339 GK-TELVTSHKRPVPLTWHF----SKKFALVPLLDGKGKKMNRKLRMSHFQNLSS----- 388
Query: 305 KGGGPKASGRIAKG-------GSASGNS---DIYRIVKM--------------------- 333
PK+ KG + GN DI + V++
Sbjct: 389 ----PKSEFYYVKGKRKLRTTKNEQGNRSPLDISKQVQLSKHELTNMRRSQVPLIRDTLS 444
Query: 334 -IMERKFQPVIIFSFSRRECEHHAMSMSKLDFNTDEEKDNIEQVFSSAILCLSEEDRGLP 392
+ E P I F FSRR C+ + D E +E + + R
Sbjct: 445 QLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIR--- 501
Query: 393 AIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFT 452
E + L RG+A HH+G FQ GLVK +FATET A G+NMPA+T V +
Sbjct: 502 --ESAVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTSVIS 559
Query: 453 SVKKWDGDTNRYIASGEYIQMSGRAGRRGKDIRGICVIMIDEKMEMSVIKDMVLGKPAPL 512
S+ K + + E QM+GRAGRRG D G V++ D++ PL
Sbjct: 560 SLSKRIDAGRQLLTPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLEPL 619
Query: 513 VSTFRLSYYTILNLMS 528
VS F SY +LNL++
Sbjct: 620 VSQFTASYGMVLNLLA 635
>Os03g0213400 Similar to RNA helicase
Length = 1139
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 111/463 (23%), Positives = 193/463 (41%), Gaps = 88/463 (19%)
Query: 83 QLDPFQSVSIACL-ERNESVLVSAHTSAGKTAIAEYAIAMSFRDK--QRVIYTSPLKALS 139
+P Q+ + L + +VL+ A T +GKT AE A+ F + +V+Y +PLKA+
Sbjct: 337 HFNPIQTQAFHVLYHSDNNVLLGAPTGSGKTISAELAMLHLFNTQPDMKVVYIAPLKAIV 396
Query: 140 NQKYRELSQEF-SDVGL----MTGDVTLQPNATCLVMTTEILR--------AMLYRGSEV 186
++ + Q + +G MTGD T P+ L+ I+ + +
Sbjct: 397 RERMNDWRQRLVTQLGKKMVEMTGDFT--PDMMALLSADIIISTPEKWDGISRSWHSRSY 454
Query: 187 IKEVAWVIFDEIHYMKDRERGVVWEESIIFL-------PPAIKMVFLSATMSNATEFAEW 239
+ +V +I DEIH + +RG + E + + +I+ V LS ++NA + A+W
Sbjct: 455 VMKVGLMILDEIHLLG-ADRGPILEVIVSRMRYISSQTERSIRFVGLSTALANARDLADW 513
Query: 240 ICNLHKQPCHVVYTDFRPTPLQHYV--FPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQ 297
+ + RP PL+ ++ +P G+F + +
Sbjct: 514 L-GVRDDGLFNFKPSVRPVPLEVHIQGYP-------------GKF-----------YCPR 548
Query: 298 SNQVDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAM 357
N ++ + A + + D +PV+IF SRR+ A+
Sbjct: 549 MNSMN-----------KPAYAAICTHSPD-------------KPVLIFVSSRRQTRLTAL 584
Query: 358 SMSKLDFNTDEEKDNIEQVFSSAILCLSE-EDRGLPAIELMLPLLKRGIAVHHSGXXXXX 416
+ +L + ++ + + +S + LS+ D L L+ GI +HH+G
Sbjct: 585 DLIQLAASDEKPRQFLSMADNSLDMILSQVSDTNLRHT------LQFGIGLHHAGLNDRD 638
Query: 417 XXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIASG--EYIQMS 474
F ++ L T T A G+N+PA V+ + +DG T RYI + +QM
Sbjct: 639 RSLVEELFSNNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYIDYDITDILQMM 698
Query: 475 GRAGRRGKDIRGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFR 517
GRAGR D G VI++ E + K L +P P+ S R
Sbjct: 699 GRAGRPQYDQHGKAVILVHEPKKSFYKK--FLYEPFPVESNLR 739
>Os03g0743800
Length = 2144
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 31/208 (14%)
Query: 83 QLDPFQS-VSIACLERNESVLVSAHTSAGKTAIAEYAI------AMSFRDKQRVIYTSPL 135
+P Q+ V A ++SVLV+A T +GKT AE+AI A+S RV+Y +P+
Sbjct: 1330 HFNPIQTQVFTASYNSDDSVLVAAPTGSGKTICAEFAILRNHQKAVSGDSNMRVVYVAPI 1389
Query: 136 KALSNQKYRELSQEFSDV-------GLMTGDVTLQPNATCLVMTTEILRAMLYRGSE--V 186
+AL+ ++Y++ +F ++ G D+ L ++ T E A+ R +
Sbjct: 1390 EALAKERYKDWESKFGELARVVELTGETAADLKLLDKGEIIISTAEKWDALSRRWKQRKN 1449
Query: 187 IKEVAWVIFDEIHYMKDRERGVVWEESII-------FLPPAIKMVFLSATMSNATEFAEW 239
+++V+ IFDE+H + E G + E I + I++V LSA+++N + EW
Sbjct: 1450 VQQVSLFIFDELHLIGS-ENGHILEIIISRMRHMANHIGSNIRIVALSASLANGKDLGEW 1508
Query: 240 ICNLHKQPCHVVYT---DFRPTPLQHYV 264
I H ++ RP PL+ ++
Sbjct: 1509 IGT----SSHSLFNFPPAVRPLPLEIHI 1532
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,037,468
Number of extensions: 1270873
Number of successful extensions: 3546
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3539
Number of HSP's successfully gapped: 6
Length of query: 1003
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 892
Effective length of database: 11,240,047
Effective search space: 10026121924
Effective search space used: 10026121924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)