Os11g0176200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HUA enhancer 2.
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Os11g0176200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HUA enhancer 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.78 | 0.289 | 8.34 | 1.05 | 0.0896 | -0.874 | 0.951 | 2.27 | 0.0347 | 15.8 | 26.64 | 1203 | -- | -- |
| 39.23 | 0.292 | 8.4 | 0.57 | 0.0814 | -0.605 | 0.785 | -- | -0.0384 | 15.3 | 26.6 | 1250 | -- | -- |
| 40.41 | 0.296 | 8.35 | 0.976 | 0.0926 | -0.858 | -- | 1.92 | 0.021 | 15.8 | 26.7 | 1200 | -- | -- |
| 41.15 | 0.299 | 8.41 | 0.553 | 0.0832 | -0.639 | -- | -- | -0.0678 | 14.8 | 26.7 | 1193 | -- | -- |
| 40.86 | 0.298 | 8.35 | 0.973 | -- | -0.865 | -- | 1.85 | 0.0213 | -- | 26.6 | 1204 | -- | -- |
| 54.79 | 0.347 | 8.41 | 0.333 | 0.188 | -- | 0.977 | -- | -0.0821 | 15.1 | -- | -- | -- | -- |
| 57.81 | 0.356 | 8.41 | 0.353 | 0.194 | -- | -- | -- | -0.0767 | 14.1 | -- | -- | -- | -- |
| 41.54 | 0.3 | 8.4 | 0.565 | -- | -0.674 | -- | -- | -0.0666 | -- | 26.53 | 1194 | -- | -- |
| 48.52 | 0.324 | 8.42 | -- | 0.106 | -0.578 | -- | -- | -0.135 | 16.6 | 27.05 | 1164 | -- | -- |
| 60.06 | 0.362 | 8.41 | 0.345 | -- | -- | -- | -- | -0.0813 | -- | -- | -- | -- | -- |
| 61.1 | 0.366 | 8.41 | -- | 0.187 | -- | -- | -- | -0.116 | 14.1 | -- | -- | -- | -- |
| 48.89 | 0.326 | 8.43 | -- | -- | -0.558 | -- | -- | -0.16 | -- | 27.7 | 1183 | -- | -- |
| 63.21 | 0.371 | 8.42 | -- | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 14 | 38.87 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 15 | 38.93 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 20 | 39.00 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 47 | 39.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 116 | 39.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 135 | 39.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 144 | 39.41 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 147 | 39.43 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 218 | 39.69 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 224 | 39.70 | radiation | 40 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 348 | 40.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 365 | 40.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 372 | 40.07 | radiation | 40 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 375 | 40.07 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 389 | 40.08 | radiation | 40 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 393 | 40.08 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 403 | 40.09 | radiation | 40 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 426 | 40.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 446 | 40.14 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 473 | 40.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 480 | 40.17 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 481 | 40.17 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 483 | 40.17 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 526 | 40.22 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 627 | 40.41 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 721 | 40.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 15 |
| 797 | 40.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 799 | 40.71 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 834 | 40.76 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 847 | 40.79 | radiation | 40 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 867 | 40.82 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 891 | 40.83 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 919 | 40.89 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 969 | 40.94 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 976 | 40.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 998 | 40.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 16 |