Os02g0739000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os02g0739000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.22 | 0.271 | 12.8 | -0.845 | 0.689 | -0.619 | 0.534 | -1.23 | -0.281 | 22.1 | 29.72 | 114 | -- | -- |
| 35.04 | 0.276 | 12.9 | -1.05 | 0.663 | -0.662 | 0.311 | -- | -0.307 | 21.9 | 49.64 | 138 | -- | -- |
| 33.88 | 0.271 | 12.8 | -0.911 | 0.638 | -0.62 | -- | -1.13 | -0.288 | 21.9 | 28.46 | 239 | -- | -- |
| 35.41 | 0.277 | 12.9 | -1.06 | 0.663 | -0.656 | -- | -- | -0.308 | 21.9 | 49.81 | 139 | -- | -- |
| 47.58 | 0.321 | 12.8 | -0.879 | -- | -0.977 | -- | -1.63 | -0.295 | -- | 40.16 | 687 | -- | -- |
| 39.36 | 0.294 | 12.8 | -0.913 | 0.673 | -- | 0.3 | -- | -0.217 | 20.9 | -- | -- | -- | -- |
| 39.67 | 0.295 | 12.8 | -0.923 | 0.672 | -- | -- | -- | -0.217 | 20.8 | -- | -- | -- | -- |
| 49.66 | 0.328 | 12.8 | -1.17 | -- | -1.01 | -- | -- | -0.373 | -- | 61.82 | 674 | -- | -- |
| 61.91 | 0.368 | 12.8 | -- | 0.68 | -0.142 | -- | -- | -0.131 | 21 | 49.81 | 139 | -- | -- |
| 65.4 | 0.378 | 12.8 | -0.923 | -- | -- | -- | -- | -0.222 | -- | -- | -- | -- | -- |
| 62.13 | 0.369 | 12.8 | -- | 0.674 | -- | -- | -- | -0.114 | 20.7 | -- | -- | -- | -- |
| 82.32 | 0.423 | 12.8 | -- | -- | -0.573 | -- | -- | -0.189 | -- | 76.3 | 624 | -- | -- |
| 87.9 | 0.438 | 12.8 | -- | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.18 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 8 | 32.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 9 | 32.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 11 | 32.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 13 | 32.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 18 | 32.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 21 | 32.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 33 | 32.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 70 | 33.12 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 84 | 33.15 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 88 | 33.16 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 110 | 33.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 125 | 33.21 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 5 |
| 138 | 33.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 140 | 33.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 151 | 33.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 160 | 33.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 192 | 33.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 201 | 33.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 219 | 33.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 12 |
| 231 | 33.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 257 | 33.34 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 388 | 33.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 389 | 33.43 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 406 | 33.44 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 423 | 33.45 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 445 | 33.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 467 | 33.47 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 19 |
| 506 | 33.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 532 | 33.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 536 | 33.50 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 586 | 33.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 610 | 33.51 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 611 | 33.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 613 | 33.52 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 614 | 33.52 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 616 | 33.52 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 623 | 33.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 628 | 33.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 635 | 33.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 637 | 33.53 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 744 | 33.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 747 | 33.56 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 896 | 33.61 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |