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Os12g0279000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ATP-dependent RNA helicase DOB1 (mRNA transport regulator MTR4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.75 (0.0158) R2 : 0.511
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.884 (0.0405) R2dC : 0.512 R2C : 0.51
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0267 (0.0332) R2dN8 : 0.000891 R2N8 : -0.000859
σ : 0.298
deviance : 40.53
__
_____
C
peak time of C : 16.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.43 0.268 9.69 0.565 0.873 -0.422 0.301 0.835 0.219 16.6 10.03 1309 -- --
33.63 0.27 9.7 0.48 0.896 -0.401 0.223 -- 0.205 16.6 10.37 1322 -- --
32.67 0.266 9.69 0.567 0.874 -0.421 -- 0.808 0.22 16.5 10.01 1308 -- --
33.53 0.27 9.71 0.438 0.875 -0.383 -- -- 0.204 16.5 12.88 1315 -- --
67.28 0.384 9.73 0.267 -- 0.366 -- 0.0108 0.0509 -- 10.01 1308 -- --
37.55 0.287 9.74 0.325 0.889 -- 0.235 -- 0.0619 16.2 -- -- -- --
37.71 0.288 9.74 0.328 0.89 -- -- -- 0.0631 16.2 -- -- -- --
67.28 0.384 9.73 0.267 -- 0.366 -- -- 0.0509 -- 10.01 1308 -- --
37.6 0.286 9.72 -- 0.961 -0.272 -- -- 0.0954 16.3 19.98 2018 -- --
80.66 0.42 9.73 0.292 -- -- -- -- 0.0394 -- -- -- -- --
40.53 0.298 9.75 -- 0.884 -- -- -- 0.0267 16.2 -- -- -- --
69.16 0.389 9.74 -- -- 0.371 -- -- 0.0215 -- 10.01 1308 -- --
82.91 0.425 9.74 -- -- -- -- -- 0.00707 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.08 wind 5.0 270 < th dose independent rect. 2 3
3 28.22 wind 5.0 270 < th dose independent rect. 1 5
4 28.38 temperature 15.0 270 > th dose independent rect. 13 16
5 28.40 temperature 15.0 270 > th dose independent rect. 10 21
7 28.51 atmosphere 1015.0 1440 < th dose independent rect. 3 6
8 28.53 precipitation 0.1 270 < th dose independent rect. 3 2
9 28.53 precipitation 0.1 270 < th dose dependent rect. 3 2
10 28.54 wind 1.0 270 > th dose independent rect. 3 1
12 28.57 temperature 15.0 270 > th dose independent rect. 11 19
14 28.67 wind 5.0 90 < th dose independent rect. 3 5
19 28.76 wind 9.0 270 < th dose independent rect. 5 22
22 28.81 temperature 15.0 270 > th dose independent rect. 5 22
26 28.83 wind 9.0 270 < th dose dependent rect. 3 2
34 28.94 precipitation 0.1 270 < th dose independent rect. 1 5
37 28.94 precipitation 0.1 270 < th dose dependent rect. 1 5
40 28.98 wind 9.0 90 < th dose dependent rect. 3 5
41 29.02 wind 5.0 10 < th dose independent rect. 3 5
42 29.02 precipitation 0.1 90 < th dose independent rect. 3 5
44 29.02 precipitation 0.1 90 < th dose dependent rect. 3 5
45 29.03 radiation 1.0 270 < th dose dependent rect. 3 2
47 29.05 temperature 10.0 270 > th dose independent rect. 3 2
49 29.05 temperature 30.0 270 < th dose independent rect. 3 2
50 29.05 humidity 50.0 270 > th dose independent rect. 3 2
53 29.05 atmosphere 995.0 270 > th dose independent rect. 3 2
54 29.05 atmosphere 1010.0 270 < th dose independent rect. 3 2
56 29.05 radiation 20.0 270 < th dose independent rect. 3 2
61 29.05 radiation 20.0 270 < th dose dependent rect. 3 2
65 29.06 radiation 1.0 270 < th dose independent rect. 3 2
90 29.10 wind 9.0 270 < th dose independent rect. 6 19
91 29.10 wind 9.0 270 < th dose dependent rect. 1 5
93 29.11 wind 7.0 10 < th dose dependent rect. 3 5
98 29.15 wind 9.0 90 < th dose independent rect. 8 19
105 29.21 precipitation 0.1 10 < th dose independent rect. 3 5
107 29.21 precipitation 0.1 10 < th dose dependent rect. 3 5
110 29.25 atmosphere 1010.0 270 < th dose independent rect. 1 5
115 29.27 temperature 10.0 90 > th dose independent rect. 3 5
117 29.27 temperature 30.0 90 < th dose independent rect. 3 5
118 29.27 humidity 50.0 90 > th dose independent rect. 3 5
120 29.27 atmosphere 995.0 90 > th dose independent rect. 3 5
121 29.27 atmosphere 1015.0 90 < th dose independent rect. 3 5
122 29.27 temperature 10.0 90 > th dose independent rect. 8 19
123 29.27 temperature 10.0 270 > th dose dependent rect. 3 2
125 29.28 radiation 10.0 270 < th dose independent rect. 1 5
126 29.28 radiation 40.0 90 < th dose independent rect. 3 5
133 29.30 temperature 10.0 270 > th dose independent rect. 1 5
135 29.30 temperature 30.0 270 < th dose independent rect. 1 5
136 29.30 humidity 50.0 270 > th dose independent rect. 1 5
139 29.30 atmosphere 995.0 270 > th dose independent rect. 1 5
144 29.30 temperature 10.0 270 > th dose independent rect. 6 19
155 29.34 radiation 40.0 270 < th dose dependent rect. 1 5
201 29.53 wind 9.0 10 < th dose independent rect. 8 19
210 29.55 precipitation 0.1 90 < th dose independent rect. 8 19
214 29.55 precipitation 0.1 90 < th dose dependent rect. 8 19
216 29.56 temperature 15.0 10 > th dose independent rect. 15 17
217 29.56 temperature 10.0 270 > th dose dependent rect. 1 5
221 29.59 temperature 10.0 10 > th dose dependent rect. 3 5
230 29.62 temperature 10.0 10 > th dose independent rect. 3 5
232 29.62 temperature 30.0 10 < th dose independent rect. 3 5
233 29.62 humidity 50.0 10 > th dose independent rect. 3 5
235 29.62 atmosphere 995.0 10 > th dose independent rect. 3 5
236 29.62 atmosphere 1015.0 10 < th dose independent rect. 3 5
238 29.62 temperature 10.0 10 > th dose independent rect. 8 19
260 29.65 atmosphere 1010.0 270 < th dose independent rect. 11 19
264 29.66 precipitation 0.1 270 < th dose independent rect. 6 19
266 29.66 precipitation 0.1 270 < th dose dependent rect. 6 19
267 29.67 atmosphere 1010.0 270 < th dose independent rect. 13 17
281 29.68 radiation 40.0 10 < th dose independent rect. 3 5
285 29.68 precipitation 0.1 270 < th dose independent rect. 5 21
292 29.68 precipitation 0.1 270 < th dose dependent rect. 5 21
293 29.69 wind 1.0 270 > th dose independent rect. 2 3
299 29.70 precipitation 0.1 10 < th dose independent rect. 8 19
300 29.70 humidity 50.0 270 > th dose dependent rect. 3 2
302 29.70 precipitation 0.1 10 < th dose dependent rect. 8 19
344 29.79 radiation 1.0 270 < th dose dependent rect. 5 21
345 29.80 wind 1.0 270 > th dose independent rect. 1 5
389 29.87 temperature 15.0 270 > th dose independent rect. 11 10
422 29.91 humidity 60.0 90 > th dose dependent rect. 19 8
455 29.96 wind 9.0 1440 < th dose independent rect. 3 6
458 29.96 temperature 10.0 1440 > th dose independent rect. 3 6
464 29.96 humidity 50.0 1440 > th dose independent rect. 3 6
467 29.96 atmosphere 995.0 1440 > th dose independent rect. 3 6
471 29.96 temperature 10.0 1440 > th dose independent rect. 9 18
493 29.98 atmosphere 995.0 90 > th dose independent rect. 8 19
511 29.99 humidity 50.0 270 > th dose dependent rect. 17 8
529 30.04 atmosphere 1010.0 90 < th dose independent rect. 15 16
579 30.14 radiation 1.0 270 < th dose independent rect. 5 21
586 30.16 humidity 50.0 270 > th dose independent rect. 6 19
598 30.19 precipitation 0.1 270 < th dose independent rect. 2 15
601 30.19 precipitation 0.1 270 < th dose dependent rect. 2 15
602 30.20 atmosphere 1005.0 270 > th dose independent rect. 2 3
613 30.22 atmosphere 995.0 10 > th dose independent rect. 8 19
615 30.22 humidity 50.0 90 > th dose dependent rect. 3 5
618 30.23 precipitation 0.1 270 < th dose independent rect. 10 21
619 30.23 atmosphere 995.0 270 > th dose dependent rect. 2 3
622 30.23 precipitation 0.1 270 < th dose dependent rect. 10 21
650 30.26 precipitation 0.1 270 < th dose independent rect. 13 17
653 30.26 atmosphere 1000.0 10 > th dose dependent rect. 3 5
655 30.26 precipitation 0.1 270 < th dose dependent rect. 13 17
659 30.27 humidity 50.0 270 > th dose dependent rect. 1 5
663 30.28 humidity 50.0 270 > th dose independent rect. 5 21
677 30.30 wind 9.0 270 < th dose dependent rect. 6 19
694 30.33 radiation 40.0 90 < th dose independent rect. 13 18
696 30.34 atmosphere 1005.0 90 > th dose independent rect. 3 5
698 30.34 humidity 50.0 90 > th dose independent rect. 8 19
722 30.38 wind 9.0 270 < th dose dependent rect. 7 3
728 30.39 wind 9.0 270 < th dose independent rect. 5 8
737 30.40 precipitation 0.1 270 < th dose independent rect. 11 19
741 30.40 precipitation 0.1 270 < th dose dependent rect. 11 19
743 30.41 atmosphere 1005.0 10 > th dose independent rect. 3 5
745 30.41 precipitation 0.1 270 < th dose independent rect. 10 10
750 30.41 precipitation 0.1 270 < th dose dependent rect. 10 10
754 30.42 atmosphere 1015.0 270 < th dose independent rect. 10 10
755 30.42 wind 9.0 270 < th dose independent rect. 20 14
756 30.42 temperature 10.0 270 > th dose independent rect. 20 14
757 30.42 atmosphere 995.0 270 > th dose independent rect. 20 14
765 30.43 temperature 10.0 270 > th dose independent rect. 5 8
766 30.43 atmosphere 995.0 270 > th dose independent rect. 5 8
767 30.43 atmosphere 1015.0 270 < th dose independent rect. 5 8
769 30.43 humidity 50.0 270 > th dose independent rect. 20 14
779 30.44 humidity 90.0 720 < th dose dependent rect. 19 3
783 30.44 radiation 20.0 270 < th dose dependent rect. 17 9
786 30.45 wind 7.0 270 < th dose independent rect. 7 3
789 30.45 humidity 50.0 270 > th dose independent rect. 17 9
809 30.47 temperature 10.0 270 > th dose independent rect. 7 3
811 30.47 atmosphere 995.0 270 > th dose independent rect. 7 3
812 30.47 atmosphere 1015.0 270 < th dose independent rect. 7 3
816 30.47 precipitation 0.1 270 < th dose independent rect. 5 8
825 30.47 precipitation 0.1 270 < th dose dependent rect. 5 8
830 30.48 humidity 50.0 270 > th dose independent rect. 7 3
831 30.48 precipitation 0.1 270 < th dose independent rect. 7 3
844 30.48 precipitation 0.1 270 < th dose dependent rect. 7 3
848 30.49 atmosphere 1015.0 270 < th dose dependent rect. 3 2
851 30.49 radiation 1.0 270 < th dose dependent rect. 9 16
857 30.50 radiation 10.0 270 < th dose independent rect. 17 9
865 30.51 wind 7.0 270 < th dose independent rect. 17 8
874 30.51 wind 9.0 90 < th dose dependent rect. 8 19
879 30.52 radiation 1.0 270 < th dose dependent rect. 12 13
886 30.53 wind 9.0 270 < th dose dependent rect. 6 7
958 30.58 wind 1.0 270 > th dose independent rect. 10 10
980 30.60 temperature 10.0 270 > th dose independent rect. 6 5
981 30.60 atmosphere 995.0 270 > th dose independent rect. 6 5
982 30.60 atmosphere 1015.0 270 < th dose independent rect. 6 5
986 30.60 temperature 10.0 270 > th dose independent rect. 17 9
990 30.60 temperature 10.0 270 > th dose independent rect. 2 15
991 30.60 atmosphere 1015.0 270 < th dose independent rect. 2 15