BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0176100 Os11g0176100|AK067921
(495 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0176100 RNA-binding region RNP-1 (RNA recognition moti... 883 0.0
Os06g0250720 98 2e-20
Os06g0248200 98 2e-20
Os06g0698400 RNA-binding region RNP-1 (RNA recognition moti... 75 8e-14
Os03g0826400 RNA-binding region RNP-1 (RNA recognition moti... 68 2e-11
>Os11g0176100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 495
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/486 (91%), Positives = 446/486 (91%)
Query: 10 QNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEYKDEETALSA 69
QNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEYKDEETALSA
Sbjct: 10 QNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEYKDEETALSA 69
Query: 70 RRNLQGYEINGRQLRVDFAENGRNADRNREKGRGGPGMASSVDTQKQLAGTPVVGDTGLH 129
RRNLQGYEINGRQLRVDFAENGRNADRNREKGRGGPGMASSVDTQKQLAGTPVVGDTGLH
Sbjct: 70 RRNLQGYEINGRQLRVDFAENGRNADRNREKGRGGPGMASSVDTQKQLAGTPVVGDTGLH 129
Query: 130 QPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSKHQLYEIMSE 189
QPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSKHQLYEIMSE
Sbjct: 130 QPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSKHQLYEIMSE 189
Query: 190 LKSLTSQNKDVANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAKXXXXXXXXXXXXXXX 249
LKSLTSQNKDVANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAK
Sbjct: 190 LKSLTSQNKDVANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAKSQQPSSSLAQSSSHI 249
Query: 250 XEPFPQPDAMISSVPRPSASLPNPNVLQDPSAQLHNFPQYPHSSQPAGTIFPHGSQSGVG 309
EPFPQPDAMISSVPRPSASLPNPNVLQDPSAQLHNFPQYPHSSQPAGTIFPHGSQSGVG
Sbjct: 250 SEPFPQPDAMISSVPRPSASLPNPNVLQDPSAQLHNFPQYPHSSQPAGTIFPHGSQSGVG 309
Query: 310 IHPPIVSQLLGASSSVPPLPLATSGSLISQVQXXXXXXXXXXXXXXXGMQQLPLTHPHVP 369
IHPPIVSQLLGASSSVPPLPLATSGSLISQVQ GMQQLPLTHPHVP
Sbjct: 310 IHPPIVSQLLGASSSVPPLPLATSGSLISQVQPPFMPHHPRPPAMPAGMQQLPLTHPHVP 369
Query: 370 QVPAIPDIAQKEMRFPEQANRSTEFAHHPKLRKLEDGTSTPGIVNNNPAVYPAPSQGMLP 429
QVPAIPDIAQKEMRFPEQANRSTEFAHHPKLRKLEDGTSTPGIVNNNPAVYPAPSQGMLP
Sbjct: 370 QVPAIPDIAQKEMRFPEQANRSTEFAHHPKLRKLEDGTSTPGIVNNNPAVYPAPSQGMLP 429
Query: 430 GGPSGSYNSAAVSFQQPENEVPQLTPDVESALLQQVLQLTPEQLSSLPVEXXXXXXXXXK 489
GGPSGSYNSAAVSFQQPENEVPQLTPDVESALLQQVLQLTPEQLSSLPVE K
Sbjct: 430 GGPSGSYNSAAVSFQQPENEVPQLTPDVESALLQQVLQLTPEQLSSLPVEQQQQVIQLQK 489
Query: 490 MLSAGK 495
MLSAGK
Sbjct: 490 MLSAGK 495
>Os06g0250720
Length = 214
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 106/225 (47%), Gaps = 54/225 (24%)
Query: 11 NRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLV-IDKETGKPKGYGFCEYKDEETALSA 69
+R V+VGNI + ATE +L CE +GPV S RL +D T K KGY F EY D+ETA SA
Sbjct: 9 SRVVYVGNIAFHATEAELRDACELIGPVRSLRLAALDPATNKRKGYAFVEYADDETARSA 68
Query: 70 RRNLQGYEINGRQLRVDFAENGRNADRNREKGRGGPGMASSVDTQKQLAGTPVVGDTGLH 129
RNL G+ + GR+LRV A P +
Sbjct: 69 LRNLHGHLLRGRELRVGLA--------------ARPSIRRRGGGGGGER----------- 103
Query: 130 QPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSKHQLYEIMSE 189
+PVG+ A+HAAS+ V +G P+ +T YLA S+ ++ E+++
Sbjct: 104 EPVGMEDAVHAASL------------VVSGRPLA------SVTRYLAARSRQEVREMVAA 145
Query: 190 LKSLTSQNKDVANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAK 234
L++ T Q K IP L A+ Q+Q +L M ++A+
Sbjct: 146 LEA-TEQLK---------IPGLGTAMEQAQRLLEMFAADEEEVAR 180
>Os06g0248200
Length = 214
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 106/225 (47%), Gaps = 54/225 (24%)
Query: 11 NRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLV-IDKETGKPKGYGFCEYKDEETALSA 69
+R V+VGNI + ATE +L CE +GPV S RL +D T K KGY F EY D+ETA SA
Sbjct: 9 SRVVYVGNIAFHATEAELRDACELIGPVRSLRLAALDPATNKRKGYAFVEYADDETARSA 68
Query: 70 RRNLQGYEINGRQLRVDFAENGRNADRNREKGRGGPGMASSVDTQKQLAGTPVVGDTGLH 129
RNL G+ + GR+LRV A P +
Sbjct: 69 LRNLHGHLLRGRELRVGLA--------------ARPSIRRRGGGGGGER----------- 103
Query: 130 QPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSKHQLYEIMSE 189
+PVG+ A+HAAS+ V +G P+ +T YLA S+ ++ E+++
Sbjct: 104 EPVGMEDAVHAASL------------VVSGRPLA------SVTRYLAARSRQEVREMVAA 145
Query: 190 LKSLTSQNKDVANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAK 234
L++ T Q K IP L A+ Q+Q +L M ++A+
Sbjct: 146 LEA-TEQLK---------IPGLGTAMEQAQRLLEMFAADEEEVAR 180
>Os06g0698400 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 99
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/87 (50%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 7 AGAQNRC---VFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETG-KPKGYGFCEYKD 62
A RC VFVGN+ Y ATE +L CEE+GPV S RL +D++ G + +G+ F EY D
Sbjct: 2 AAVSCRCSSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYLD 61
Query: 63 EETALSARRNLQGYEINGRQLRVDFAE 89
+ETA SA RNL + GR LRVD A+
Sbjct: 62 DETARSACRNLDRRALRGRALRVDLAD 88
>Os03g0826400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 312
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%)
Query: 14 VFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEYKDEETALSARRNL 73
VFVG IPYD TE L+ + + G VV LV DK TGK KG+ F Y+D+ + + A NL
Sbjct: 38 VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 74 QGYEINGRQLRVD 86
G ++ GR +RVD
Sbjct: 98 NGAKVLGRIVRVD 110
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,864,834
Number of extensions: 773490
Number of successful extensions: 2411
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2425
Number of HSP's successfully gapped: 5
Length of query: 495
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 390
Effective length of database: 11,553,331
Effective search space: 4505799090
Effective search space used: 4505799090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)