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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0826400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0183) R2 : 1.55e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00102 (0.0385) R2dN8 : 2.01e-06 R2N8 : 1.55e-06
σ : 0.344
deviance : 54.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.04 0.24 11 -0.497 0.59 1.22 0.303 0.776 -0.191 9.36 15.08 708 -- --
26.26 0.239 11 -0.625 0.589 1.13 0.173 -- -0.23 9.14 16.92 657 -- --
26.24 0.239 11 -0.538 0.594 1.16 -- 0.411 -0.212 8.95 16.5 646 -- --
26.34 0.239 11 -0.614 0.597 1.14 -- -- -0.228 9.03 16.97 649 -- --
34.77 0.275 11 -0.482 -- 0.903 -- 0.874 -0.149 -- 13.49 3010 -- --
45.89 0.318 11 -0.318 0.308 -- 0.0575 -- -0.0359 10.3 -- -- -- --
45.9 0.317 11 -0.316 0.308 -- -- -- -0.0358 10.3 -- -- -- --
33.27 0.269 11 -0.611 -- 0.779 -- -- -0.216 -- 20.4 1590 -- --
34.45 0.273 11 -- 0.549 0.832 -- -- -0.147 8.74 20.19 587 -- --
51.67 0.336 11 -0.32 -- -- -- -- -0.0365 -- -- -- -- --
48.52 0.326 11 -- 0.31 -- -- -- -0.000643 10.3 -- -- -- --
41.64 0.301 11 -- -- 0.575 -- -- -0.113 -- 21.59 1548 -- --
54.37 0.344 11 -- -- -- -- -- -0.00102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.44 temperature 10 720 > th dose dependent rect. 1 23
2 25.46 temperature 10 720 > th dose dependent rect. 12 23
3 25.47 temperature 10 720 > th dose dependent rect. 3 21
4 25.49 temperature 20 1440 > th dose dependent rect. 16 15
15 25.60 temperature 20 720 > th dose dependent rect. 19 21
28 25.70 temperature 20 1440 > th dose dependent sin 13 NA
32 25.71 temperature 10 720 > th dose dependent rect. 12 21
34 25.72 temperature 10 720 > th dose dependent rect. 10 23
36 25.74 temperature 20 4320 > th dose dependent rect. 21 1
44 25.77 temperature 10 720 > th dose dependent rect. 18 23
48 25.79 temperature 30 1440 < th dose dependent rect. 18 1
89 25.93 temperature 20 4320 > th dose dependent rect. 20 8
93 25.94 temperature 30 4320 < th dose dependent rect. 21 1
94 25.94 temperature 20 4320 > th dose dependent rect. 20 6
102 25.96 temperature 20 1440 > th dose dependent rect. 18 3
106 25.97 temperature 10 4320 > th dose dependent rect. 21 1
119 25.98 temperature 15 720 > th dose dependent rect. 23 23
133 26.02 temperature 20 4320 > th dose dependent rect. 1 1
148 26.04 temperature 15 720 > th dose dependent no NA NA
149 26.04 temperature 20 1440 > th dose dependent rect. 18 1
160 26.07 temperature 20 4320 > th dose dependent rect. 3 1
187 26.11 temperature 20 4320 > th dose dependent rect. 23 5
199 26.13 temperature 20 4320 > th dose dependent rect. 23 3
228 26.17 temperature 30 1440 < th dose dependent rect. 17 4
241 26.20 temperature 10 1440 > th dose dependent rect. 18 1
264 26.23 temperature 20 1440 > th dose dependent rect. 3 4
265 26.23 temperature 10 4320 > th dose dependent rect. 19 7
266 26.23 temperature 30 4320 < th dose dependent rect. 19 7
320 26.29 temperature 20 1440 > th dose dependent rect. 1 6
372 26.33 temperature 20 720 > th dose dependent rect. 14 23
445 26.41 temperature 10 1440 > th dose dependent rect. 17 4
642 26.57 temperature 25 1440 < th dose independent rect. 19 2
999 26.84 temperature 30 4320 < th dose dependent rect. 1 1