BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0826400 Os03g0826400|AK071472
         (312 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0826400  RNA-binding region RNP-1 (RNA recognition moti...   595   e-170
Os11g0176100  RNA-binding region RNP-1 (RNA recognition moti...    68   7e-12

>Os03g0826400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 312

 Score =  595 bits (1534), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 294/312 (94%), Positives = 294/312 (94%)

Query: 1   MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSXXXXXXX 120
           EVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVS       
Sbjct: 61  EVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYKKKEE 120

Query: 121 XXXXXXXXXXXARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHH 180
                      ARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHH
Sbjct: 121 EDEEELQKKREARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHH 180

Query: 181 EPPMSHKKFPSSAGEQRFPDRAKEENKSTGREGQSSRSEAYKDRDSRLRHSDRGSKDHDR 240
           EPPMSHKKFPSSAGEQRFPDRAKEENKSTGREGQSSRSEAYKDRDSRLRHSDRGSKDHDR
Sbjct: 181 EPPMSHKKFPSSAGEQRFPDRAKEENKSTGREGQSSRSEAYKDRDSRLRHSDRGSKDHDR 240

Query: 241 YRHDRSPERSRGDRQRNNDRYAQGRDEKSERYRSEVKHDEGDQKRSRRDTDSSGHYERRG 300
           YRHDRSPERSRGDRQRNNDRYAQGRDEKSERYRSEVKHDEGDQKRSRRDTDSSGHYERRG
Sbjct: 241 YRHDRSPERSRGDRQRNNDRYAQGRDEKSERYRSEVKHDEGDQKRSRRDTDSSGHYERRG 300

Query: 301 NEDSERYRKSRR 312
           NEDSERYRKSRR
Sbjct: 301 NEDSERYRKSRR 312



>Os11g0176100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 495

 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 46/73 (63%)

Query: 38  VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
           VFVG IPYD TE  L+ +  + G VV   LV DK TGK KG+ F  Y+D+ + + A  NL
Sbjct: 14  VFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEYKDEETALSARRNL 73

Query: 98  NGAKVLGRIVRVD 110
            G ++ GR +RVD
Sbjct: 74  QGYEINGRQLRVD 86



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,060,591
Number of extensions: 495111
Number of successful extensions: 2937
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2936
Number of HSP's successfully gapped: 6
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)