Os11g0176100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os11g0176100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.08 | 0.235 | 9.67 | 1.23 | 0.736 | -0.744 | -0.344 | 3.19 | 0.417 | 2.38 | 20.69 | 1221 | -- | -- |
| 32.52 | 0.266 | 9.76 | 0.543 | 0.717 | -0.808 | 0.0352 | -- | 0.318 | 2.74 | 15.59 | 9861 | -- | -- |
| 25.35 | 0.235 | 9.66 | 1.3 | 0.636 | -0.725 | -- | 3.24 | 0.44 | 2.4 | 20.88 | 1652 | -- | -- |
| 31.07 | 0.26 | 9.75 | 0.559 | 0.684 | -0.817 | -- | -- | 0.285 | 2.5 | 11.4 | 8386 | -- | -- |
| 36.01 | 0.281 | 9.72 | 0.753 | -- | -1.17 | -- | 2.31 | 0.336 | -- | 20.88 | 1652 | -- | -- |
| 41.96 | 0.304 | 9.81 | 0.136 | 0.652 | -- | -0.0936 | -- | 0.0391 | 2.57 | -- | -- | -- | -- |
| 41.99 | 0.303 | 9.81 | 0.138 | 0.652 | -- | -- | -- | 0.0397 | 2.56 | -- | -- | -- | -- |
| 38.44 | 0.29 | 9.76 | 0.421 | -- | -1.4 | -- | -- | 0.243 | -- | 11.4 | 8386 | -- | -- |
| 35.48 | 0.279 | 9.79 | -- | 0.426 | -0.813 | -- | -- | 0.121 | 2.72 | 11.4 | 8386 | -- | -- |
| 66.88 | 0.382 | 9.8 | 0.166 | -- | -- | -- | -- | 0.056 | -- | -- | -- | -- | -- |
| 42.49 | 0.305 | 9.81 | -- | 0.654 | -- | -- | -- | 0.0243 | 2.57 | -- | -- | -- | -- |
| 42.85 | 0.306 | 9.77 | -- | -- | -1.27 | -- | -- | 0.181 | -- | 11.4 | 8386 | -- | -- |
| 67.61 | 0.384 | 9.81 | -- | -- | -- | -- | -- | 0.0376 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 11 | 24.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 12 | 24.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 17 | 24.63 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 18 | 24.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 37 | 24.75 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 44 | 24.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 11 |
| 49 | 24.89 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 56 | 24.91 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 67 | 24.96 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 79 | 24.99 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 87 | 25.01 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 92 | 25.01 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 106 | 25.05 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 107 | 25.05 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 128 | 25.10 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 155 | 25.17 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 161 | 25.19 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 208 | 25.28 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 215 | 25.29 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 222 | 25.31 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 240 | 25.33 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 245 | 25.34 | wind | 3 | 43200 | > th | dose dependent | sin | 19 | NA |
| 246 | 25.34 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 247 | 25.34 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 278 | 25.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 287 | 25.38 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 296 | 25.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 314 | 25.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 315 | 25.40 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 319 | 25.40 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 12 |
| 328 | 25.41 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 332 | 25.41 | wind | 9 | 43200 | < th | dose dependent | sin | 20 | NA |
| 333 | 25.41 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 393 | 25.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 441 | 25.50 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 448 | 25.50 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 486 | 25.52 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 529 | 25.54 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 531 | 25.54 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 622 | 25.60 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 681 | 25.63 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 733 | 25.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 745 | 25.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 784 | 25.68 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 816 | 25.70 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 836 | 25.71 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |