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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0698400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.47 (0.0222) R2 : 0.0121
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.111 (0.0467) R2dN8 : 0.0157 R2N8 : 0.0121
σ : 0.418
deviance : 80.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.65 0.406 3.47 -0.0543 0.158 -0.684 -0.181 1.7 -0.0719 9.42 1000 721 -- --
75.04 0.403 3.45 0.0379 0.152 -0.395 -0.151 -- -0.0729 9.53 1000 702 -- --
74.76 0.403 3.47 -0.0576 0.159 -0.673 -- 1.66 -0.0731 9.55 1000 720 -- --
75.12 0.404 3.45 0.0332 0.153 -0.397 -- -- -0.0739 9.49 1000 702 -- --
76.23 0.407 3.47 -0.0417 -- -0.624 -- 1.42 -0.0718 -- 1000 721 -- --
78.71 0.416 3.46 0.101 0.141 -- -0.178 -- -0.101 9.16 -- -- -- --
78.82 0.416 3.46 0.0949 0.141 -- -- -- -0.101 9.48 -- -- -- --
76.5 0.407 3.46 0.0343 -- -0.385 -- -- -0.0742 -- 1000 702 -- --
75.15 0.404 3.45 -- 0.154 -0.403 -- -- -0.0768 9.47 1000 702 -- --
79.98 0.418 3.46 0.0939 -- -- -- -- -0.1 -- -- -- -- --
79.06 0.416 3.46 -- 0.141 -- -- -- -0.111 9.43 -- -- -- --
76.53 0.407 3.46 -- -- -0.39 -- -- -0.0766 -- 1000 702 -- --
80.22 0.418 3.47 -- -- -- -- -- -0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.74 atmosphere 1000.0 30 > th dose independent rect. 3 23
4 72.09 atmosphere 1005.0 10 > th dose dependent rect. 2 2
7 72.75 atmosphere 1000.0 720 > th dose independent rect. 21 18
10 72.95 wind 1.0 14400 < th dose dependent rect. 6 1
11 73.04 humidity 50.0 10 > th dose independent rect. 3 23
16 73.21 temperature 15.0 90 > th dose dependent rect. 3 8
17 73.22 radiation 1.0 43200 < th dose dependent rect. 3 1
19 73.30 atmosphere 1000.0 90 > th dose independent rect. 11 18
20 73.30 wind 1.0 14400 < th dose dependent rect. 4 4
22 73.34 temperature 10.0 30 > th dose dependent rect. 3 23
23 73.36 wind 1.0 14400 < th dose independent rect. 6 1
25 73.38 wind 1.0 14400 > th dose independent rect. 4 3
26 73.38 wind 1.0 14400 < th dose independent rect. 4 4
30 73.46 wind 9.0 30 < th dose independent rect. 3 23
35 73.55 radiation 40.0 10 < th dose independent rect. 3 23
36 73.57 atmosphere 1000.0 270 > th dose independent rect. 7 22
41 73.61 atmosphere 1005.0 90 > th dose independent rect. 2 1
43 73.64 atmosphere 1000.0 270 > th dose independent rect. 23 14
45 73.65 humidity 70.0 14400 < th dose independent rect. 8 1
48 73.69 humidity 70.0 14400 > th dose independent rect. 8 1
50 73.69 atmosphere 1000.0 270 > th dose independent rect. 12 23
52 73.74 humidity 80.0 14400 < th dose dependent rect. 3 6
54 73.75 wind 1.0 14400 < th dose dependent rect. 2 6
56 73.76 atmosphere 1000.0 720 > th dose independent rect. 3 22
58 73.77 temperature 25.0 90 > th dose independent rect. 1 1
62 73.79 temperature 25.0 90 > th dose dependent rect. 2 1
73 73.84 temperature 25.0 10 > th dose dependent rect. 24 11
74 73.85 humidity 90.0 90 < th dose independent rect. 2 1
76 73.85 atmosphere 1000.0 10 > th dose independent rect. 11 23
77 73.86 wind 1.0 30 > th dose independent rect. 2 1
79 73.87 temperature 25.0 270 > th dose dependent rect. 4 4
80 73.88 wind 3.0 90 < th dose independent rect. 2 1
90 73.91 atmosphere 1000.0 270 > th dose independent rect. 9 19
91 73.91 atmosphere 1000.0 720 > th dose independent rect. 13 20
102 73.92 temperature 30.0 30 < th dose dependent rect. 2 1
106 73.92 humidity 80.0 14400 < th dose dependent rect. 7 2
108 73.93 temperature 10.0 30 > th dose independent rect. 2 1
110 73.93 temperature 30.0 30 < th dose independent rect. 2 1
111 73.93 humidity 50.0 30 > th dose independent rect. 2 1
114 73.93 atmosphere 995.0 30 > th dose independent rect. 2 1
116 73.93 atmosphere 1010.0 30 < th dose independent rect. 2 1
118 73.93 radiation 1.0 30 < th dose independent rect. 2 1
123 73.93 precipitation 0.1 30 < th dose independent rect. 2 1
124 73.93 temperature 10.0 30 > th dose independent rect. 3 23
126 73.93 radiation 1.0 30 < th dose dependent rect. 2 1
132 73.93 precipitation 0.1 30 < th dose dependent rect. 2 1
137 73.94 humidity 70.0 14400 > th dose independent rect. 4 5
138 73.94 humidity 70.0 14400 > th dose independent rect. 1 8
141 73.94 wind 7.0 30 < th dose dependent rect. 2 1
143 73.94 temperature 10.0 30 > th dose dependent rect. 2 1
145 73.94 atmosphere 1015.0 30 < th dose dependent rect. 2 1
151 73.95 wind 9.0 1440 < th dose independent rect. 3 1
152 73.95 temperature 10.0 1440 > th dose independent rect. 3 1
155 73.95 temperature 30.0 1440 < th dose independent rect. 3 1
159 73.95 humidity 50.0 1440 > th dose independent rect. 3 1
168 73.95 atmosphere 995.0 1440 > th dose independent rect. 3 1
169 73.95 radiation 1.0 1440 < th dose independent rect. 3 1
195 73.95 temperature 10.0 1440 > th dose independent rect. 4 23
200 73.95 humidity 50.0 30 > th dose dependent rect. 2 1
223 73.99 precipitation 0.1 30 < th dose independent rect. 3 23
227 73.99 precipitation 0.1 30 < th dose dependent rect. 3 23
228 74.00 humidity 90.0 30 > th dose independent rect. 2 1
283 74.05 temperature 25.0 14400 > th dose dependent rect. 13 1
293 74.07 humidity 90.0 14400 > th dose dependent rect. 4 2
307 74.09 temperature 30.0 14400 < th dose independent rect. 14 1
309 74.09 wind 1.0 14400 < th dose independent rect. 2 6
319 74.12 humidity 80.0 4320 > th dose independent rect. 3 9
328 74.13 wind 3.0 43200 < th dose dependent rect. 19 1
339 74.14 temperature 25.0 10 > th dose dependent rect. 21 14
354 74.18 temperature 25.0 10 > th dose dependent rect. 16 19
361 74.20 humidity 70.0 4320 > th dose independent rect. 21 1
362 74.20 atmosphere 1000.0 720 > th dose independent rect. 3 8
363 74.20 humidity 80.0 4320 < th dose independent rect. 3 10
380 74.23 wind 1.0 14400 > th dose independent rect. 2 6
393 74.24 atmosphere 1000.0 30 > th dose dependent rect. 4 7
394 74.24 radiation 40.0 10 < th dose dependent rect. 3 23
398 74.25 atmosphere 1000.0 720 > th dose independent rect. 17 16
402 74.26 atmosphere 1000.0 720 > th dose independent rect. 6 18
409 74.28 temperature 25.0 270 > th dose independent rect. 3 6
417 74.29 temperature 25.0 270 > th dose independent rect. 4 4
429 74.29 humidity 80.0 14400 < th dose dependent rect. 21 13
440 74.31 temperature 30.0 14400 > th dose independent rect. 14 1
448 74.32 atmosphere 1000.0 720 > th dose independent rect. 3 15
457 74.33 temperature 25.0 30 > th dose dependent sin 9 NA
472 74.35 humidity 90.0 90 < th dose independent rect. 1 4
474 74.35 atmosphere 1000.0 720 < th dose independent rect. 21 20
480 74.36 atmosphere 1000.0 90 < th dose independent rect. 15 6
495 74.38 atmosphere 1000.0 90 > th dose independent rect. 3 8
496 74.38 atmosphere 1000.0 720 > th dose independent rect. 6 9
520 74.40 atmosphere 1000.0 90 < th dose independent rect. 15 4
547 74.42 atmosphere 995.0 30 > th dose dependent rect. 11 17
549 74.43 temperature 25.0 14400 > th dose independent rect. 10 1
550 74.43 temperature 25.0 14400 < th dose independent rect. 10 1
563 74.44 temperature 20.0 14400 > th dose dependent rect. 8 1
565 74.45 humidity 60.0 14400 < th dose independent rect. 11 1
575 74.46 atmosphere 1000.0 720 > th dose independent rect. 21 14
576 74.46 atmosphere 1000.0 720 > th dose independent rect. 17 22
602 74.48 temperature 25.0 14400 > th dose independent rect. 8 3
636 74.51 temperature 25.0 14400 > th dose independent rect. 6 7
640 74.51 atmosphere 1000.0 270 < th dose dependent rect. 13 3
650 74.52 precipitation 0.1 14400 > th dose independent rect. 1 6
654 74.52 humidity 70.0 4320 > th dose dependent rect. 10 2
661 74.53 temperature 25.0 14400 < th dose independent rect. 8 3
672 74.53 humidity 70.0 4320 > th dose dependent rect. 3 9
675 74.54 wind 5.0 14400 < th dose independent rect. 11 1
686 74.55 wind 5.0 14400 < th dose independent rect. 11 4
717 74.57 precipitation 0.1 14400 < th dose independent rect. 1 6
718 74.57 wind 7.0 90 < th dose independent rect. 4 7
724 74.57 atmosphere 995.0 30 > th dose dependent rect. 11 5
727 74.57 precipitation 0.1 14400 < th dose dependent rect. 1 6
736 74.58 wind 5.0 14400 < th dose independent rect. 10 7
737 74.58 temperature 25.0 14400 < th dose independent rect. 6 7
755 74.59 atmosphere 1000.0 270 < th dose dependent rect. 3 14
764 74.60 atmosphere 1000.0 720 > th dose independent rect. 3 12
772 74.60 atmosphere 1000.0 270 < th dose dependent rect. 12 7
778 74.61 humidity 70.0 4320 > th dose independent rect. 11 1
784 74.61 temperature 25.0 14400 > th dose dependent sin 1 NA
806 74.62 atmosphere 1000.0 720 > th dose independent rect. 12 13
810 74.62 atmosphere 1000.0 90 < th dose dependent rect. 15 7
826 74.63 atmosphere 1000.0 90 < th dose dependent rect. 15 4
834 74.64 atmosphere 1000.0 720 < th dose independent rect. 4 22
840 74.64 precipitation 0.1 14400 > th dose dependent rect. 1 6
844 74.64 atmosphere 1000.0 270 < th dose dependent rect. 12 20
855 74.65 atmosphere 1000.0 720 < th dose independent rect. 17 23
869 74.66 wind 5.0 14400 > th dose independent rect. 10 7
874 74.66 wind 7.0 90 < th dose independent rect. 4 15
894 74.67 atmosphere 1000.0 720 > th dose independent no NA NA
895 74.67 radiation 1.0 720 < th dose independent rect. 8 1
909 74.67 atmosphere 1000.0 10 > th dose independent rect. 11 21
913 74.67 radiation 1.0 720 < th dose dependent rect. 8 1
920 74.67 precipitation 0.1 14400 > th dose dependent rect. 23 9
940 74.68 atmosphere 1000.0 720 < th dose independent rect. 13 23
952 74.69 humidity 80.0 4320 > th dose independent sin 4 NA
953 74.69 atmosphere 1000.0 720 < th dose independent no NA NA
963 74.69 radiation 10.0 30 < th dose independent rect. 4 22
973 74.69 humidity 90.0 14400 > th dose dependent rect. 18 11