BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0698400 Os06g0698400|AK108486
(99 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0698400 RNA-binding region RNP-1 (RNA recognition moti... 140 1e-34
Os06g0250720 107 1e-24
Os06g0248200 107 1e-24
Os11g0176100 RNA-binding region RNP-1 (RNA recognition moti... 72 1e-13
>Os06g0698400 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 99
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MAAVSCRCSSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYL 60
MAAVSCRCSSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYL
Sbjct: 1 MAAVSCRCSSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYL 60
Query: 61 DDETARSACRN 71
DDETARSACRN
Sbjct: 61 DDETARSACRN 71
>Os06g0250720
Length = 214
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 60/71 (84%)
Query: 1 MAAVSCRCSSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYL 60
MA V+CRCS VV+VGN+++ ATEAELRDACE IGPV SLRLA + A N+R+G+AFVEY
Sbjct: 1 MADVNCRCSRVVYVGNIAFHATEAELRDACELIGPVRSLRLAALDPATNKRKGYAFVEYA 60
Query: 61 DDETARSACRN 71
DDETARSA RN
Sbjct: 61 DDETARSALRN 71
>Os06g0248200
Length = 214
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 60/71 (84%)
Query: 1 MAAVSCRCSSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYL 60
MA V+CRCS VV+VGN+++ ATEAELRDACE IGPV SLRLA + A N+R+G+AFVEY
Sbjct: 1 MADVNCRCSRVVYVGNIAFHATEAELRDACELIGPVRSLRLAALDPATNKRKGYAFVEYA 60
Query: 61 DDETARSACRN 71
DDETARSA RN
Sbjct: 61 DDETARSALRN 71
>Os11g0176100 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 495
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 4/65 (6%)
Query: 7 RCSSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYLDDETAR 66
RC VFVGN+ Y ATE +L CEE+GPV S RL +D++ G + +G+ F EY D+ETA
Sbjct: 12 RC---VFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETG-KPKGYGFCEYKDEETAL 67
Query: 67 SACRN 71
SA RN
Sbjct: 68 SARRN 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,340,700
Number of extensions: 70368
Number of successful extensions: 371
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 4
Length of query: 99
Length of database: 17,035,801
Length adjustment: 68
Effective length of query: 31
Effective length of database: 13,485,249
Effective search space: 418042719
Effective search space used: 418042719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)