BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0698400 Os06g0698400|AK108486
         (99 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71800.1  | chr1:26999606-27001850 FORWARD LENGTH=462           72   9e-14
AT1G74230.1  | chr1:27915346-27916857 FORWARD LENGTH=290           52   8e-08
AT5G61030.1  | chr5:24560870-24562152 FORWARD LENGTH=310           49   4e-07
AT4G00830.1  | chr4:352782-354965 FORWARD LENGTH=496               47   3e-06
AT1G60900.1  | chr1:22424008-22427806 FORWARD LENGTH=590           45   8e-06

>AT1G71800.1 | chr1:26999606-27001850 FORWARD LENGTH=462
          Length = 461

 Score = 71.6 bits (174), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 4/65 (6%)

Query: 7  RCSSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYLDDETAR 66
          RC   VFVGN+ Y ATE +LR+ C E+GPV S RL  D + G + +G+ F EY D+ETA 
Sbjct: 9  RC---VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETG-KPKGYGFCEYKDEETAL 64

Query: 67 SACRN 71
          SA RN
Sbjct: 65 SARRN 69



>AT1G74230.1 | chr1:27915346-27916857 FORWARD LENGTH=290
          Length = 289

 Score = 51.6 bits (122), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 1  MAAVSCRCSSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYL 60
          + ++ C  SS +FVG +SY   E  LR+A  + G V   ++ VD + G R RGFAFV + 
Sbjct: 25 LQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETG-RSRGFAFVTFT 83

Query: 61 DDETARSACR 70
            E A +A +
Sbjct: 84 STEEASNAMQ 93



>AT5G61030.1 | chr5:24560870-24562152 FORWARD LENGTH=310
          Length = 309

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 3  AVSCRCSSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYLDD 62
          A+ C  SS +F+G ++Y   E  LR+A  + G V   R+ +D + G R RGF FV +   
Sbjct: 33 AIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETG-RSRGFGFVTFTSS 91

Query: 63 ETARSACR 70
          E A SA +
Sbjct: 92 EAASSAIQ 99



>AT4G00830.1 | chr4:352782-354965 FORWARD LENGTH=496
          Length = 495

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 10  SVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYLDDETARSA 68
           S VF+G +     E +LRD CEEIG +  +RL  D D+G+  +G+AFV +   + A+ A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGD-SKGYAFVAFKTKDVAQKA 173



>AT1G60900.1 | chr1:22424008-22427806 FORWARD LENGTH=590
          Length = 589

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 12  VFVGNVSYRATEAELRDACEEIGPVESLRLAVDEDAGNRRRGFAFVEYLDDETARSAC 69
           +FVG + Y  TE ++R+  E  GP+    L  D + GN  +G+AF  Y D      AC
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGN-SKGYAFCVYQDPSVTDIAC 433



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,462,283
Number of extensions: 44168
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 7
Length of query: 99
Length of database: 11,106,569
Length adjustment: 69
Effective length of query: 30
Effective length of database: 9,214,865
Effective search space: 276445950
Effective search space used: 276445950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)