BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0168300 Os11g0168300|AK061362
         (270 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0168300  Alba, DNA/RNA-binding protein family protein        261   5e-70
Os09g0542000  Alba, DNA/RNA-binding protein family protein        183   1e-46
Os03g0166000  Alba, DNA/RNA-binding protein family protein        137   6e-33
Os03g0735300  Alba, DNA/RNA-binding protein family protein        135   3e-32
Os04g0428950  Alba, DNA/RNA-binding protein family protein        124   8e-29

>Os11g0168300 Alba, DNA/RNA-binding protein family protein
          Length = 270

 Score =  261 bits (666), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 133/170 (78%), Positives = 133/170 (78%)

Query: 1   MDRYQRVEKPRNETPISENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINKT 60
           MDRYQRVEKPRNETPISENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINKT
Sbjct: 1   MDRYQRVEKPRNETPISENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINKT 60

Query: 61  VMVVELIKRRIGGLHQXXXXXXXXXXXXWXXXXXXXXXXXTTRHVSMIAITLSKKALDTL 120
           VMVVELIKRRIGGLHQ            W           TTRHVSMIAITLSKKALDTL
Sbjct: 61  VMVVELIKRRIGGLHQITSTESIDITDTWEPLEEGLLPLETTRHVSMIAITLSKKALDTL 120

Query: 121 SPGYQPPIPAEEVRPAFDYEHEESFPTNXXXXXXXXXXXXXXAMSNGPPA 170
           SPGYQPPIPAEEVRPAFDYEHEESFPTN              AMSNGPPA
Sbjct: 121 SPGYQPPIPAEEVRPAFDYEHEESFPTNRGRGRGGGRRGRGRAMSNGPPA 170



>Os09g0542000 Alba, DNA/RNA-binding protein family protein
          Length = 299

 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 104/147 (70%)

Query: 1   MDRYQRVEKPRNETPISENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINKT 60
           MDRYQRVEKPR E PI ENEIRIT QGRMRNYI+Y  +LL++ G DE+V KAMGRAINKT
Sbjct: 31  MDRYQRVEKPREEAPIKENEIRITTQGRMRNYITYATTLLQDKGSDEVVFKAMGRAINKT 90

Query: 61  VMVVELIKRRIGGLHQXXXXXXXXXXXXWXXXXXXXXXXXTTRHVSMIAITLSKKALDTL 120
           VM+ ELIKRRI GLHQ            W           TTRHVSMI ITLSKK LDT 
Sbjct: 91  VMIAELIKRRIVGLHQNTTTGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKELDTS 150

Query: 121 SPGYQPPIPAEEVRPAFDYEHEESFPT 147
           S GYQ P+PA++V+P  +YE+EE  P+
Sbjct: 151 SIGYQSPLPADKVKPLVEYENEEDAPS 177



>Os03g0166000 Alba, DNA/RNA-binding protein family protein
          Length = 309

 Score =  137 bits (346), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 89/136 (65%), Gaps = 1/136 (0%)

Query: 1   MDRYQRVEKPRNETP-ISENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINK 59
           MDRYQRVEKPR E   ISENEIRIT QG +RNY++Y  SLL+E    EIV+KAMG+AI+K
Sbjct: 1   MDRYQRVEKPRPEAAVISENEIRITTQGLIRNYVTYATSLLQEKRVKEIVLKAMGQAISK 60

Query: 60  TVMVVELIKRRIGGLHQXXXXXXXXXXXXWXXXXXXXXXXXTTRHVSMIAITLSKKALDT 119
           TV + E+IK+RI GLHQ            W            TRHVSMI+I+LS K L+ 
Sbjct: 61  TVAIAEIIKKRIPGLHQDTSISSVSITDVWEPIEEGLVPLEMTRHVSMISISLSPKELNK 120

Query: 120 LSPGYQPPIPAEEVRP 135
            S GYQ P+ AE ++P
Sbjct: 121 SSAGYQAPLHAEPIKP 136



>Os03g0735300 Alba, DNA/RNA-binding protein family protein
          Length = 296

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 87/131 (66%)

Query: 1   MDRYQRVEKPRNETPISENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINKT 60
           MDRYQRVE+PR E+ I ENEIRITAQG +RNY+SY  SLL++    EIV+KAMG+AI+K+
Sbjct: 1   MDRYQRVERPRPESAIEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISKS 60

Query: 61  VMVVELIKRRIGGLHQXXXXXXXXXXXXWXXXXXXXXXXXTTRHVSMIAITLSKKALDTL 120
           V V E+IK+R+ GL+Q            W            TRHVSMI+ITLS + LD  
Sbjct: 61  VAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSPRDLDKN 120

Query: 121 SPGYQPPIPAE 131
           SPGYQ P+  E
Sbjct: 121 SPGYQTPVYVE 131



>Os04g0428950 Alba, DNA/RNA-binding protein family protein
          Length = 98

 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 66/89 (74%)

Query: 1  MDRYQRVEKPRNETPISENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINKT 60
          MDRYQRVEKPR E  I  NEIRITAQGR RNYI+Y ++LL++N  DEIVIKAMGRAINKT
Sbjct: 1  MDRYQRVEKPREEAAIGANEIRITAQGRTRNYITYALALLQDNATDEIVIKAMGRAINKT 60

Query: 61 VMVVELIKRRIGGLHQXXXXXXXXXXXXW 89
          V +VEL+KRRI GLHQ            W
Sbjct: 61 VAIVELLKRRIVGLHQNTSIESIDITDTW 89



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,578,877
Number of extensions: 127754
Number of successful extensions: 221
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 5
Length of query: 270
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 171
Effective length of database: 11,866,615
Effective search space: 2029191165
Effective search space used: 2029191165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)