Os03g0166000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alba, DNA/RNA-binding protein family protein.
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Os03g0166000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alba, DNA/RNA-binding protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.41 | 0.61 | 8.35 | 0.513 | 1.72 | 0.89 | 0.89 | 2.57 | -0.218 | 18.9 | 15.85 | 114 | -- | -- |
| 178.1 | 0.622 | 8.34 | 0.548 | 1.7 | 0.636 | 0.709 | -- | -0.205 | 18.7 | 11.22 | 125 | -- | -- |
| 170.19 | 0.608 | 8.35 | 0.502 | 1.73 | 0.883 | -- | 2.54 | -0.21 | 18.8 | 16.38 | 123 | -- | -- |
| 179.32 | 0.624 | 8.34 | 0.529 | 1.72 | 0.685 | -- | -- | -0.207 | 18.8 | 10 | 124 | -- | -- |
| 222.38 | 0.695 | 8.34 | 0.473 | -- | 1.81 | -- | 1.36 | -0.354 | -- | -67.35 | 709 | -- | -- |
| 184.31 | 0.636 | 8.33 | 0.547 | 1.78 | -- | 0.899 | -- | -0.174 | 18.1 | -- | -- | -- | -- |
| 186.27 | 0.639 | 8.33 | 0.538 | 1.78 | -- | -- | -- | -0.17 | 18.1 | -- | -- | -- | -- |
| 225.17 | 0.699 | 8.34 | 0.397 | -- | 1.86 | -- | -- | -0.388 | -- | -54.63 | 709 | -- | -- |
| 186.69 | 0.636 | 8.36 | -- | 1.71 | 0.697 | -- | -- | -0.268 | 18.8 | 10 | 126 | -- | -- |
| 351 | 0.875 | 8.3 | 0.488 | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
| 193.91 | 0.651 | 8.34 | -- | 1.77 | -- | -- | -- | -0.23 | 18.1 | -- | -- | -- | -- |
| 229.32 | 0.705 | 8.35 | -- | -- | 1.88 | -- | -- | -0.434 | -- | -45.71 | 710 | -- | -- |
| 357.27 | 0.882 | 8.31 | -- | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.00 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 2 | 168.33 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 15 |
| 3 | 168.34 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 4 | 168.39 | wind | 3 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 5 | 168.39 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 6 | 168.39 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 10 | 11 |
| 10 | 168.50 | radiation | 1 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 12 | 168.52 | wind | 3 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 13 | 168.52 | wind | 3 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 18 | 168.59 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 56 | 168.98 | radiation | 1 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 58 | 169.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 63 | 169.20 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 9 | 5 |
| 68 | 169.28 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 10 | 3 |
| 70 | 169.29 | radiation | 40 | 10 | < th | dose independent | rect. | 11 | 23 |
| 72 | 169.33 | radiation | 10 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 91 | 169.40 | radiation | 20 | 90 | > th | dose dependent | no | NA | NA |
| 92 | 169.40 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 246 | 169.44 | radiation | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 270 | 169.52 | radiation | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 273 | 169.54 | radiation | 40 | 10 | < th | dose independent | rect. | 13 | 23 |
| 276 | 169.55 | radiation | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 281 | 169.56 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 304 | 169.65 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 11 | 7 |
| 326 | 169.71 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 344 | 169.72 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 23 |
| 389 | 169.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 458 | 169.84 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 21 |
| 460 | 169.85 | radiation | 40 | 10 | < th | dose independent | no | NA | NA |
| 461 | 169.85 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 14 |
| 462 | 169.85 | wind | 7 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 467 | 169.86 | radiation | 30 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 639 | 170.02 | radiation | 10 | 10 | > th | dose independent | rect. | 6 | 2 |
| 654 | 170.03 | wind | 3 | 720 | > th | dose independent | rect. | 7 | 5 |
| 655 | 170.03 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 660 | 170.05 | wind | 3 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 733 | 170.12 | radiation | 40 | 10 | < th | dose independent | sin | 18 | NA |
| 739 | 170.15 | radiation | 40 | 10 | > th | dose independent | sin | 19 | NA |
| 740 | 170.15 | radiation | 20 | 270 | > th | dose independent | sin | 6 | NA |
| 741 | 170.15 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 759 | 170.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 788 | 170.23 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 816 | 170.25 | radiation | 40 | 10 | < th | dose independent | rect. | 9 | 23 |
| 840 | 170.34 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 846 | 170.37 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 6 |
| 872 | 170.41 | humidity | 90 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 874 | 170.42 | radiation | 40 | 10 | < th | dose independent | rect. | 15 | 23 |
| 896 | 170.43 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 922 | 170.50 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 973 | 170.55 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 1 |
| 979 | 170.57 | radiation | 10 | 10 | > th | dose independent | rect. | 16 | 16 |
| 983 | 170.58 | temperature | 30 | 270 | < th | dose independent | sin | 7 | NA |
| 999 | 170.59 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 11 |