Os03g0735300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alba, DNA/RNA-binding protein family protein.
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Os03g0735300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alba, DNA/RNA-binding protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.81 | 0.289 | 12.7 | 0.772 | 1.33 | 0.619 | 0.655 | 0.416 | 0.147 | 18 | 6.214 | 71 | -- | -- |
| 38.14 | 0.288 | 12.7 | 0.778 | 1.32 | 0.578 | 0.688 | -- | 0.147 | 17.9 | 5.75 | 70 | -- | -- |
| 38.85 | 0.29 | 12.7 | 0.769 | 1.33 | 0.611 | -- | 0.425 | 0.15 | 18 | 5.519 | 70 | -- | -- |
| 39.22 | 0.292 | 12.7 | 0.776 | 1.33 | 0.587 | -- | -- | 0.151 | 17.9 | 5.23 | 70 | -- | -- |
| 71.79 | 0.395 | 12.7 | 0.673 | -- | 1.48 | -- | 0.152 | 0.0118 | -- | -22.98 | 599 | -- | -- |
| 42.79 | 0.307 | 12.7 | 0.778 | 1.41 | -- | 0.643 | -- | 0.169 | 17.1 | -- | -- | -- | -- |
| 43.83 | 0.31 | 12.7 | 0.778 | 1.42 | -- | -- | -- | 0.172 | 17.1 | -- | -- | -- | -- |
| 71.82 | 0.395 | 12.7 | 0.667 | -- | 1.48 | -- | -- | 0.00979 | -- | -25.22 | 599 | -- | -- |
| 55.21 | 0.346 | 12.7 | -- | 1.32 | 0.565 | -- | -- | 0.0704 | 17.9 | 6.598 | 81 | -- | -- |
| 149.27 | 0.571 | 12.6 | 0.728 | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
| 59.79 | 0.362 | 12.7 | -- | 1.41 | -- | -- | -- | 0.0852 | 17.2 | -- | -- | -- | -- |
| 83.54 | 0.426 | 12.7 | -- | -- | 1.51 | -- | -- | -0.0656 | -- | -22.42 | 604 | -- | -- |
| 163.24 | 0.596 | 12.7 | -- | -- | -- | -- | -- | 0.0552 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.38 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 4 | 31.94 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 6 | 32.11 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 7 | 32.12 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 8 | 32.12 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 10 | 32.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 11 | 32.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 12 | 32.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 15 | 32.32 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 19 | 32.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 21 | 32.35 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 22 | 32.35 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 25 | 32.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 27 | 32.35 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 30 | 32.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 31 | 32.35 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 32 | 32.36 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 38 | 32.40 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 47 | 32.52 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 48 | 32.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 49 | 32.55 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 50 | 32.55 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 94 | 32.65 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 100 | 32.77 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 102 | 32.77 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 108 | 32.87 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 109 | 32.87 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 120 | 32.94 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 122 | 32.95 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 124 | 32.95 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 125 | 32.95 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 127 | 32.95 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 128 | 32.95 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 129 | 32.95 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 131 | 32.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 132 | 32.96 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 143 | 32.97 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 146 | 32.97 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 147 | 32.97 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 148 | 32.97 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 155 | 32.98 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 195 | 33.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 219 | 33.28 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 225 | 33.32 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 229 | 33.32 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 270 | 33.42 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 281 | 33.46 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 286 | 33.48 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 308 | 33.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 336 | 33.60 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 350 | 33.61 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 441 | 33.82 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 476 | 33.88 | temperature | 15.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 517 | 33.99 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 522 | 34.00 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 524 | 34.01 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 540 | 34.04 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 558 | 34.10 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 562 | 34.10 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 585 | 34.14 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 604 | 34.18 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 616 | 34.20 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 624 | 34.22 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 627 | 34.23 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 639 | 34.25 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 648 | 34.27 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 668 | 34.32 | wind | 9.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 710 | 34.40 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 716 | 34.41 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 720 | 34.42 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 724 | 34.42 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 745 | 34.48 | radiation | 30.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 772 | 34.52 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 775 | 34.52 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 786 | 34.53 | radiation | 20.0 | 30 | < th | dose independent | rect. | 4 | 18 |
| 793 | 34.55 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 811 | 34.58 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 819 | 34.59 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 820 | 34.59 | humidity | 50.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 822 | 34.59 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 834 | 34.64 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 850 | 34.68 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 856 | 34.70 | temperature | 15.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 862 | 34.71 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 870 | 34.73 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 873 | 34.73 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 874 | 34.74 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 883 | 34.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 9 |
| 884 | 34.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 886 | 34.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 888 | 34.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 909 | 34.80 | radiation | 10.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 917 | 34.81 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 919 | 34.81 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 922 | 34.82 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 929 | 34.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 950 | 34.84 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 957 | 34.85 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 981 | 34.88 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 982 | 34.88 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 986 | 34.88 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 987 | 34.88 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 988 | 34.88 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 992 | 34.89 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 993 | 34.89 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |