BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0735300 Os03g0735300|AK071715
(296 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07030.1 | chr3:2223001-2225254 REVERSE LENGTH=406 203 9e-53
AT1G76010.1 | chr1:28528505-28530488 REVERSE LENGTH=351 164 4e-41
AT1G20220.1 | chr1:7005090-7007285 REVERSE LENGTH=316 162 1e-40
>AT3G07030.1 | chr3:2223001-2225254 REVERSE LENGTH=406
Length = 405
Score = 203 bits (516), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 115/128 (89%)
Query: 1 MDRYQRVERPRPESAIEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISKS 60
MDRYQRV +P+PES I ENEIRIT++GLIRNY+SYATSLLQ++ +K+IVLKAMGQAISK+
Sbjct: 1 MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60
Query: 61 VAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSPRDLDKN 120
VA++EI+K ++PGL+QD ISS+SITDVWEP EEGL P+E+TRHVSMISITLS +L+K+
Sbjct: 61 VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120
Query: 121 SPGYQTPV 128
SPGYQ P
Sbjct: 121 SPGYQAPA 128
>AT1G76010.1 | chr1:28528505-28530488 REVERSE LENGTH=351
Length = 350
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 105/131 (80%)
Query: 1 MDRYQRVERPRPESAIEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISKS 60
MD+YQRV +P+ ++ I+ NEIRIT+QG RNY++YA +LLQD+ E+V KAMG+AI+K+
Sbjct: 1 MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60
Query: 61 VAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSPRDLDKN 120
V + E+IK+R+P L+Q+T+I S ITD WEP EEGL+PLE TRHVSMI+ITLS +L+ +
Sbjct: 61 VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120
Query: 121 SPGYQTPVYVE 131
S GYQ P+ +E
Sbjct: 121 SVGYQCPIPIE 131
>AT1G20220.1 | chr1:7005090-7007285 REVERSE LENGTH=316
Length = 315
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 102/131 (77%)
Query: 1 MDRYQRVERPRPESAIEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISKS 60
MD+YQRVE+P+ ++ I ENEIRIT+ G RNY++YA +LLQ+ + E++ KAMG+AI+KS
Sbjct: 1 MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60
Query: 61 VAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSPRDLDKN 120
V + E+IK+R+PGL+Q T+I S ITD WEP EEGL +E TRHVSMI+ITLS L+ +
Sbjct: 61 VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120
Query: 121 SPGYQTPVYVE 131
S GYQ P+ +E
Sbjct: 121 SVGYQCPIPIE 131
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,744,830
Number of extensions: 90657
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 3
Length of query: 296
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,419,801
Effective search space: 1667120598
Effective search space used: 1667120598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)