BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0735300 Os03g0735300|AK071715
         (296 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0735300  Alba, DNA/RNA-binding protein family protein        265   4e-71
Os03g0166000  Alba, DNA/RNA-binding protein family protein        225   3e-59
Os09g0542000  Alba, DNA/RNA-binding protein family protein        179   2e-45
Os11g0168300  Alba, DNA/RNA-binding protein family protein        173   1e-43
Os04g0428950  Alba, DNA/RNA-binding protein family protein        137   9e-33

>Os03g0735300 Alba, DNA/RNA-binding protein family protein
          Length = 296

 Score =  265 bits (676), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 138/162 (85%), Positives = 138/162 (85%)

Query: 1   MDRYQRVERPRPESAIEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISKS 60
           MDRYQRVERPRPESAIEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISKS
Sbjct: 1   MDRYQRVERPRPESAIEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISKS 60

Query: 61  VAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSPRDLDKN 120
           VAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSPRDLDKN
Sbjct: 61  VAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSPRDLDKN 120

Query: 121 SPGYQTPVYVEXXXXXXXXXXXXXXXXXXXXXXXXDYEDSYV 162
           SPGYQTPVYVE                        DYEDSYV
Sbjct: 121 SPGYQTPVYVEQPRQQPRLQQAPPPPQRQVRQPPPDYEDSYV 162



>Os03g0166000 Alba, DNA/RNA-binding protein family protein
          Length = 309

 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/132 (81%), Positives = 126/132 (95%), Gaps = 1/132 (0%)

Query: 1   MDRYQRVERPRPESA-IEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISK 59
           MDRYQRVE+PRPE+A I ENEIRIT QGLIRNYV+YATSLLQ++R+KEIVLKAMGQAISK
Sbjct: 1   MDRYQRVEKPRPEAAVISENEIRITTQGLIRNYVTYATSLLQEKRVKEIVLKAMGQAISK 60

Query: 60  SVAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSPRDLDK 119
           +VA+AEIIKKR+PGL+QDT+ISSVSITDVWEPIEEGLVPLEMTRHVSMISI+LSP++L+K
Sbjct: 61  TVAIAEIIKKRIPGLHQDTSISSVSITDVWEPIEEGLVPLEMTRHVSMISISLSPKELNK 120

Query: 120 NSPGYQTPVYVE 131
           +S GYQ P++ E
Sbjct: 121 SSAGYQAPLHAE 132



>Os09g0542000 Alba, DNA/RNA-binding protein family protein
          Length = 299

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 109/128 (85%)

Query: 1   MDRYQRVERPRPESAIEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISKS 60
           MDRYQRVE+PR E+ I+ENEIRIT QG +RNY++YAT+LLQD+   E+V KAMG+AI+K+
Sbjct: 31  MDRYQRVEKPREEAPIKENEIRITTQGRMRNYITYATTLLQDKGSDEVVFKAMGRAINKT 90

Query: 61  VAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSPRDLDKN 120
           V +AE+IK+R+ GL+Q+T   S  ITD+WEP+EEGL+PLE TRHVSMI+ITLS ++LD +
Sbjct: 91  VMIAELIKRRIVGLHQNTTTGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKELDTS 150

Query: 121 SPGYQTPV 128
           S GYQ+P+
Sbjct: 151 SIGYQSPL 158



>Os11g0168300 Alba, DNA/RNA-binding protein family protein
          Length = 270

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/131 (64%), Positives = 105/131 (80%)

Query: 1   MDRYQRVERPRPESAIEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISKS 60
           MDRYQRVE+PR E+ I ENEIRITAQG +RNY+SY  SLL++    EIV+KAMG+AI+K+
Sbjct: 1   MDRYQRVEKPRNETPISENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINKT 60

Query: 61  VAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSPRDLDKN 120
           V V E+IK+R+ GL+Q T+  S+ ITD WEP+EEGL+PLE TRHVSMI+ITLS + LD  
Sbjct: 61  VMVVELIKRRIGGLHQITSTESIDITDTWEPLEEGLLPLETTRHVSMIAITLSKKALDTL 120

Query: 121 SPGYQTPVYVE 131
           SPGYQ P+  E
Sbjct: 121 SPGYQPPIPAE 131



>Os04g0428950 Alba, DNA/RNA-binding protein family protein
          Length = 98

 Score =  137 bits (345), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 81/96 (84%)

Query: 1  MDRYQRVERPRPESAIEENEIRITAQGLIRNYVSYATSLLQDRRIKEIVLKAMGQAISKS 60
          MDRYQRVE+PR E+AI  NEIRITAQG  RNY++YA +LLQD    EIV+KAMG+AI+K+
Sbjct: 1  MDRYQRVEKPREEAAIGANEIRITAQGRTRNYITYALALLQDNATDEIVIKAMGRAINKT 60

Query: 61 VAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGL 96
          VA+ E++K+R+ GL+Q+T+I S+ ITD WEP+EEGL
Sbjct: 61 VAIVELLKRRIVGLHQNTSIESIDITDTWEPLEEGL 96



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,139,409
Number of extensions: 131324
Number of successful extensions: 262
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 5
Length of query: 296
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 196
Effective length of database: 11,814,401
Effective search space: 2315622596
Effective search space used: 2315622596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)