BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0163800 Os11g0163800|AK105532
(419 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0163800 Protein of unknown function DUF793 family protein 392 e-109
Os12g0164600 Protein of unknown function DUF793 family protein 303 1e-82
Os04g0688000 Protein of unknown function DUF793 family protein 67 3e-11
>Os11g0163800 Protein of unknown function DUF793 family protein
Length = 419
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 221/369 (59%), Positives = 221/369 (59%)
Query: 51 DLEAFQRHVAAHLADLRGGEDELLSIEWIRRLLEAFLLCQEEFXXXXXXXXXXXXXXXXX 110
DLEAFQRHVAAHLADLRGGEDELLSIEWIRRLLEAFLLCQEEF
Sbjct: 51 DLEAFQRHVAAHLADLRGGEDELLSIEWIRRLLEAFLLCQEEFRVVVALARRRGALSAAA 110
Query: 111 EKMVGDFYERAVKALDVCNAARDGVDQVRRWERLAGIAASVLLAPGEIHEGQLRRARKXX 170
EKMVGDFYERAVKALDVCNAARDGVDQVRRWERLAGIAASVLLAPGEIHEGQLRRARK
Sbjct: 111 EKMVGDFYERAVKALDVCNAARDGVDQVRRWERLAGIAASVLLAPGEIHEGQLRRARKAL 170
Query: 171 XXXXXXXXXXXXXXXXXXXXXXXXXXHRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 230
HRN
Sbjct: 171 SDLSVLLIDDAAAAAGGGGVASFLSSHRNRSFGRARASPSRSATLASSSSSSSSSSSSSH 230
Query: 231 XXXXXXXXXXNWSAARQLQAIGSGLAAPRAHEGGLVAPVYSMGCXXXXXXXXXXXXXPCP 290
NWSAARQLQAIGSGLAAPRAHEGGLVAPVYSMGC PCP
Sbjct: 231 FRSLSWSVSRNWSAARQLQAIGSGLAAPRAHEGGLVAPVYSMGCLLHLAAWALVAAVPCP 290
Query: 291 DRXXXXXXXXXXXXXXXXXXXXXXXXXXXQERLTEEGKRKDRRNSCGLLKEIHALEKCTQ 350
DR QERLTEEGKRKDRRNSCGLLKEIHALEKCTQ
Sbjct: 291 DRAAALQAHHLPAAPPRAAFPWAPPLLALQERLTEEGKRKDRRNSCGLLKEIHALEKCTQ 350
Query: 351 RLAEAIDAAPVPLSGXXXXXXXXXXXXXXXXXXXXXXGLEPLERQVREVFHRIVRSRMEG 410
RLAEAIDAAPVPLSG GLEPLERQVREVFHRIVRSRMEG
Sbjct: 351 RLAEAIDAAPVPLSGEREAEVREAAAELAAVCAAMRAGLEPLERQVREVFHRIVRSRMEG 410
Query: 411 LDSPMLNAD 419
LDSPMLNAD
Sbjct: 411 LDSPMLNAD 419
>Os12g0164600 Protein of unknown function DUF793 family protein
Length = 414
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 186/385 (48%), Positives = 202/385 (52%), Gaps = 25/385 (6%)
Query: 51 DLEAFQRHVAAHLADL----------------RGGEDELLSIEWIRRLLEAFLLCQEEFX 94
DLEAFQRH AA L +L GG +E+LS+ WIRRLLEAF+LCQEEF
Sbjct: 39 DLEAFQRHFAASLGELLPGEVEGGGGGGGGGGGGGGEEILSVAWIRRLLEAFILCQEEFR 98
Query: 95 XXXXXXXXXXXXXXXXEKMVGDFYERAVKALDVCNAARDGVDQVRRWERLAGIAASVLLA 154
EK+V +F+ERAVKALDVCNAARDGVDQVRRWERLA IAASVLLA
Sbjct: 99 VFVAQARRRGALPAAGEKLVVEFHERAVKALDVCNAARDGVDQVRRWERLADIAASVLLA 158
Query: 155 PGEIHEGQLRRARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRNXXXXXXXXXXXXXXX 214
PGEIHEGQLRRA + HRN
Sbjct: 159 PGEIHEGQLRRA-RKALSDLSVLLVDDTAASGSGGVASFLASHRNRSFGRARASPSRASF 217
Query: 215 XXXXXXXXXXXXXXXXXXXXXXXXXXNWSAARQLQAIGSGLAAPRAHEGGLVAPVYSMGC 274
WSA+RQLQAIG+GLAAPRAHE GL APVY+MGC
Sbjct: 218 AGATSSSHFRSLSWSVSRA--------WSASRQLQAIGAGLAAPRAHEAGLAAPVYAMGC 269
Query: 275 XXXXXXXXXXXXXPCPDRXXXXXXXXXXXXXXXXXXXXXXXXXXXQERLTEEGKRKDRRN 334
PCPDR QERL EEGKRKDRRN
Sbjct: 270 VLHLVAWALVAAVPCPDRSTALQAHHLPAAPARAAFPWAPPLLTLQERLAEEGKRKDRRN 329
Query: 335 SCGLLKEIHALEKCTQRLAEAIDAAPVPLSGXXXXXXXXXXXXXXXXXXXXXXGLEPLER 394
SCGLLKEIH LEK TQ+L +AIDAAP+PL G GLEPLER
Sbjct: 330 SCGLLKEIHVLEKSTQKLTDAIDAAPIPLFGDREADVREAAAELAAVCAAMRDGLEPLER 389
Query: 395 QVREVFHRIVRSRMEGLDSPMLNAD 419
QVREVFHRIVRSR+EGLDS M NAD
Sbjct: 390 QVREVFHRIVRSRVEGLDSSMRNAD 414
>Os04g0688000 Protein of unknown function DUF793 family protein
Length = 456
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Query: 51 DLEAFQRHVAAHLADLRGGED------ELLSIEWIRRLLEAFLLCQEEFXXXXXXXX-XX 103
+++AF RH A L DL + +LLS+ W RRLL++FL+C EEF
Sbjct: 50 EIDAFHRHAADLLHDLLSDSNSDPSAPDLLSLAWTRRLLDSFLICLEEFRAILFALADSQ 109
Query: 104 XXXXXXXEKMVGDFYERAVKALDVCNAARDGVDQVRRWER--LAGIAASVLLAPGEIHEG 161
++++ DF +RAVKALD+CNA RDG+D +R+W + AA + E
Sbjct: 110 PLSRPPLDRLLLDFLDRAVKALDLCNALRDGLDLIRQWRKHLAIAAAALATAPAAQRGEA 169
Query: 162 QLRRARK 168
Q+RRARK
Sbjct: 170 QIRRARK 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,715,481
Number of extensions: 199773
Number of successful extensions: 392
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 5
Length of query: 419
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 316
Effective length of database: 11,657,759
Effective search space: 3683851844
Effective search space used: 3683851844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)