BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0163500 Os11g0163500|AK101154
         (483 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0163500  Homeodomain-like containing protein                 897   0.0  
Os12g0163500  Homeodomain-like containing protein                 503   e-142
Os02g0542400  Conserved hypothetical protein                      236   3e-62

>Os11g0163500 Homeodomain-like containing protein
          Length = 483

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/462 (93%), Positives = 433/462 (93%)

Query: 22  CASSCTPVSILYGTNKKLKCLGDRFGEMEGSNPPGNMTQGPSYGSLDLHGISKQMHPPNS 81
           CASSCTPVSILYGTNKKLKCLGDRFGEMEGSNPPGNMTQGPSYGSLDLHGISKQMHPPNS
Sbjct: 22  CASSCTPVSILYGTNKKLKCLGDRFGEMEGSNPPGNMTQGPSYGSLDLHGISKQMHPPNS 81

Query: 82  GNQGFNQPQIPGNFTIPMDRVTEPDNISDGVQLGQHGKIAXXXXXXXXXSKNHGSDEEEH 141
           GNQGFNQPQIPGNFTIPMDRVTEPDNISDGVQLGQHGKIA         SKNHGSDEEEH
Sbjct: 82  GNQGFNQPQIPGNFTIPMDRVTEPDNISDGVQLGQHGKIAHHHHHHRHHSKNHGSDEEEH 141

Query: 142 DMNEDAADGKDKKGSPWHRMKWTDSMVKLLITAVSYTGEDPGADLGGGRRNYSMMQKKGK 201
           DMNEDAADGKDKKGSPWHRMKWTDSMVKLLITAVSYTGEDPGADLGGGRRNYSMMQKKGK
Sbjct: 142 DMNEDAADGKDKKGSPWHRMKWTDSMVKLLITAVSYTGEDPGADLGGGRRNYSMMQKKGK 201

Query: 202 WKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTACNVVENHSLLDHMDISE 261
           WKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTACNVVENHSLLDHMDISE
Sbjct: 202 WKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTACNVVENHSLLDHMDISE 261

Query: 262 KMKEDARKILNSKHLFYEEMCSYHNNNRISLPEDPALQQSLQLALRCKEDNDFMRHASGX 321
           KMKEDARKILNSKHLFYEEMCSYHNNNRISLPEDPALQQSLQLALRCKEDNDFMRHASG 
Sbjct: 262 KMKEDARKILNSKHLFYEEMCSYHNNNRISLPEDPALQQSLQLALRCKEDNDFMRHASGD 321

Query: 322 XXXXXXXXXXXXXXXXXXXHRAVDTNIRGPSMHKRMWHVVDHGDVGFVTSCSNDGSGRSD 381
                              HRAVDTNIRGPSMHKRMWHVVDHGDVGFVTSCSNDGSGRSD
Sbjct: 322 AELDDDQSEDSDYEENEEEHRAVDTNIRGPSMHKRMWHVVDHGDVGFVTSCSNDGSGRSD 381

Query: 382 PYDVLDINKPFPDGCDLALVQKDLALKAAEIQKHRLQIETKAVQLAKQRLKWEMFRKNKD 441
           PYDVLDINKPFPDGCDLALVQKDLALKAAEIQKHRLQIETKAVQLAKQRLKWEMFRKNKD
Sbjct: 382 PYDVLDINKPFPDGCDLALVQKDLALKAAEIQKHRLQIETKAVQLAKQRLKWEMFRKNKD 441

Query: 442 LELEKLALENEQMMLQNKRFELDLRHKELELEIKIKGNANHP 483
           LELEKLALENEQMMLQNKRFELDLRHKELELEIKIKGNANHP
Sbjct: 442 LELEKLALENEQMMLQNKRFELDLRHKELELEIKIKGNANHP 483



>Os12g0163500 Homeodomain-like containing protein
          Length = 432

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/442 (59%), Positives = 323/442 (73%), Gaps = 17/442 (3%)

Query: 49  MEGSNPPGNMTQGPSYGSLDLHGISKQMHPPNSGNQGFNQPQIPGNFTIPMDRVTEPDNI 108
           MEG+N P         GSL +   S QMH PN G QGF+  Q+PGN ++ +++ T+ D++
Sbjct: 1   MEGNNLPS--------GSL-MRSNSGQMHAPNPGKQGFDHTQMPGNLSMHVNQSTDSDHL 51

Query: 109 SDGVQLGQHGKI-AXXXXXXXXXSKNHGSDEEEHDMNEDAAD---GKDKKGSPWHRMKWT 164
           S+  Q G+ GK+           +KN  SD+EEH +NEDA D   GK KKG+ W RMKWT
Sbjct: 52  SE-FQFGELGKVDHHHHHHHRQHAKNGMSDDEEHGVNEDATDSQSGKGKKGAAWQRMKWT 110

Query: 165 DSMVKLLITAVSYTGEDPGADLGGGRRNYSMMQKKGKWKAISKVMGERGCHVSPQQCEDK 224
           DSMVKLLITAVSYTGEDPGAD G G+RN ++MQKKGKWKAISKVMGERGC VSPQQCEDK
Sbjct: 111 DSMVKLLITAVSYTGEDPGADSGAGKRNSAIMQKKGKWKAISKVMGERGCSVSPQQCEDK 170

Query: 225 FNDLNKRYKRLTDILGRGTACNVVENHSLLDHM-DISEKMKEDARKILNSKHLFYEEMCS 283
           FNDLNKRYKRLTDILGRGTAC +VENH+LLD M ++S+KMK+DARKIL+SKHLFYEEMCS
Sbjct: 171 FNDLNKRYKRLTDILGRGTACKIVENHALLDCMSNLSDKMKDDARKILSSKHLFYEEMCS 230

Query: 284 YHNNNRISLPEDPALQQSLQLALRCKEDNDFMRHASGXXXXXXXXXXXXXXXXXXXXHRA 343
           YHNNNR+SLPEDPALQ+SLQLALRCK+++D  R  SG                    +  
Sbjct: 231 YHNNNRVSLPEDPALQRSLQLALRCKDEHDLRRGTSGDADEDDQSVDSDSEEENDEENYT 290

Query: 344 VDTNIRGPSMHKRMWHVVDHGDVGFVTSCSNDG-SGRSDPYDV-LDINKPFPDGCDLALV 401
           +  +     MHKR+  + D  DVGF  S S+ G S RSD + + LDINK FPDG +LAL 
Sbjct: 291 LQGDKSALPMHKRLRLMTDQEDVGFGNSSSSHGCSRRSDSHGISLDINKAFPDGTNLALA 350

Query: 402 QKDLALKAAEIQKHRLQIETKAVQLAKQRLKWEMFRKNKDLELEKLALENEQMMLQNKRF 461
           QKDLA ++A++++ RLQIE +AV LAKQRLKWE F KNKD ELE++ LENE+M L+NKR 
Sbjct: 351 QKDLATQSADLEEQRLQIEVQAVYLAKQRLKWERFSKNKDRELEQMRLENEKMRLENKRL 410

Query: 462 ELDLRHKELELEIKIKGNANHP 483
           EL++RHKELELE+K KG+ NH 
Sbjct: 411 ELEVRHKELELELKQKGSGNHA 432



>Os02g0542400 Conserved hypothetical protein
          Length = 410

 Score =  236 bits (602), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 149/331 (45%), Positives = 207/331 (62%), Gaps = 18/331 (5%)

Query: 153 KKGSPWHRMKWTDSMVKLLITAVSYTGEDPGADLGGG---RRNYSMMQKKGKWKAISKVM 209
           K+ S WHR+KW   MVKLL++AV+Y  ED   D G G   RR ++M+++KGKW+ +S  M
Sbjct: 87  KEASQWHRVKWISGMVKLLVSAVAYIDEDVDMDYGTGSAARRKHAMLKRKGKWRLVSAAM 146

Query: 210 GERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTACNVVENHSLLDHMDISEKMKEDARK 269
            ERG  VSPQQCEDKFNDLNKRYKR+T+ILGRGTAC VVE+  LL+ M +S K+KE+ARK
Sbjct: 147 TERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTACQVVEHPELLEGMRLSGKLKEEARK 206

Query: 270 ILNSKHLFYEEMCSYHNNNRISLPEDPALQQSLQLALRCKEDNDFMRHASGXXXXXXXXX 329
            LNSKHL YEEMCSYHN N++ L +DPALQ+SL+LALR  E++   ++  G         
Sbjct: 207 HLNSKHLHYEEMCSYHNRNKMCLFDDPALQKSLRLALRSGEEHA-KKNPFGYDDEDFSDD 265

Query: 330 XXXXXXXXXXXHRAVDTNIRGPSMHKRMWHVVDHGDVGFVTSCSNDGSGRSDPYDVLDIN 389
                        A D +  G    KR+ H  D  +  F ++ S           V+D+N
Sbjct: 266 DDEDEEFDDLEVSAEDHH-HGIHGAKRLKH--DQEETHFGSNLSE--------VAVIDMN 314

Query: 390 KPFPDGCDLALVQKDLA---LKAAEIQKHRLQIETKAVQLAKQRLKWEMFRKNKDLELEK 446
           K   +G      +K  +   ++   ++K RL+I+ + +++ ++  KW  F K KD ELEK
Sbjct: 315 KMLSEGSGGPTAEKSPSTPGMRDIRLEKRRLKIKAQMLKIEQKHFKWLRFSKEKDRELEK 374

Query: 447 LALENEQMMLQNKRFELDLRHKELELEIKIK 477
           + LENE+M L+N+R EL+L+ KE+E+ IK K
Sbjct: 375 MRLENEKMKLENERLELELKLKEIEMGIKPK 405



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,517,872
Number of extensions: 712308
Number of successful extensions: 1892
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1878
Number of HSP's successfully gapped: 4
Length of query: 483
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 378
Effective length of database: 11,553,331
Effective search space: 4367159118
Effective search space used: 4367159118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)