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Os12g0163500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.014) R2 : 0.00234
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0304 (0.0294) R2dN8 : 0.00302 R2N8 : 0.00234
σ : 0.263
deviance : 31.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.15 0.236 11.2 -0.0253 0.0307 0.228 0.837 1.1 0.029 2.27 70.18 1180 -- --
27.26 0.243 11.2 0.127 0.0454 0.305 0.678 -- 0.0529 2.66 70 1125 -- --
26.65 0.24 11.2 -0.0166 0.0583 0.248 -- 1.15 0.0231 13.5 69.92 1685 -- --
28.53 0.249 11.2 0.0914 0.0381 0.296 -- -- 0.041 0.809 69 990 -- --
26.86 0.241 11.2 -0.0261 -- 0.238 -- 1.18 0.0209 -- 69.65 1666 -- --
30.35 0.258 11.2 0.0671 0.0316 -- -0.621 -- 0.0406 14.9 -- -- -- --
31.45 0.263 11.2 0.0527 0.0648 -- -- -- 0.0364 10.3 -- -- -- --
28.62 0.249 11.2 0.105 -- 0.292 -- -- 0.0481 -- 70 984 -- --
28.75 0.25 11.2 -- 0.0654 0.302 -- -- 0.0384 21.6 69 966 -- --
31.7 0.263 11.2 0.0516 -- -- -- -- 0.0362 -- -- -- -- --
31.52 0.263 11.2 -- 0.0645 -- -- -- 0.0305 10.3 -- -- -- --
28.91 0.25 11.2 -- -- 0.278 -- -- 0.0212 -- 68.83 970 -- --
31.77 0.263 11.2 -- -- -- -- -- 0.0304 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.29 humidity 80 270 > th dose independent rect. 4 19
2 24.29 temperature 30 270 < th dose dependent rect. 23 5
3 24.29 temperature 30 270 < th dose dependent rect. 22 7
4 24.31 humidity 80 270 > th dose independent rect. 5 17
5 24.39 temperature 25 270 < th dose independent rect. 23 5
6 24.43 temperature 25 270 < th dose independent rect. 22 7
10 24.47 humidity 70 270 > th dose dependent rect. 5 17
40 24.82 radiation 20 270 < th dose dependent rect. 4 21
60 25.09 radiation 10 270 < th dose independent rect. 4 21
71 25.13 humidity 70 1440 > th dose independent rect. 17 20
80 25.17 humidity 80 1440 < th dose independent rect. 7 7
87 25.20 humidity 70 1440 > th dose independent rect. 9 4
94 25.25 humidity 70 1440 < th dose independent rect. 9 3
95 25.25 humidity 80 1440 > th dose independent rect. 7 7
99 25.25 humidity 80 1440 < th dose dependent rect. 17 19
118 25.29 humidity 70 1440 < th dose independent rect. 15 21
119 25.29 humidity 60 1440 > th dose dependent rect. 7 6
126 25.31 humidity 70 1440 < th dose independent rect. 17 20
128 25.32 temperature 25 90 < th dose independent rect. 1 5
167 25.40 humidity 80 1440 < th dose dependent sin 9 NA
177 25.42 humidity 90 1440 < th dose dependent rect. 6 7
180 25.42 radiation 20 270 < th dose dependent rect. 5 18
189 25.43 radiation 40 270 < th dose dependent rect. 17 22
209 25.46 humidity 70 1440 > th dose independent rect. 22 15
233 25.49 humidity 70 270 > th dose independent rect. 17 21
241 25.50 temperature 30 10 < th dose dependent rect. 24 6
247 25.51 temperature 25 270 < th dose independent rect. 1 1
255 25.52 humidity 70 1440 > th dose independent sin 9 NA
266 25.53 humidity 80 1440 < th dose independent rect. 7 3
285 25.54 humidity 90 1440 < th dose dependent sin 4 NA
293 25.55 humidity 80 1440 > th dose independent rect. 7 3
348 25.59 humidity 50 90 > th dose dependent rect. 6 9
367 25.62 humidity 70 1440 < th dose independent sin 9 NA
403 25.65 humidity 80 270 < th dose independent sin 22 NA
404 25.65 humidity 80 1440 < th dose independent sin 4 NA
414 25.65 humidity 90 1440 < th dose dependent rect. 9 1
445 25.68 humidity 80 270 < th dose independent rect. 8 10
456 25.68 radiation 40 270 < th dose dependent rect. 18 16
533 25.72 humidity 70 90 > th dose independent rect. 6 10
611 25.77 humidity 50 1440 > th dose dependent sin 3 NA
618 25.78 humidity 80 270 > th dose independent sin 23 NA
644 25.79 radiation 40 270 < th dose dependent rect. 5 10
657 25.81 humidity 70 1440 > th dose independent rect. 8 12
669 25.81 humidity 70 1440 > th dose independent rect. 8 23
685 25.82 temperature 15 270 > th dose independent rect. 4 19
699 25.83 humidity 70 1440 > th dose independent no NA NA
702 25.83 humidity 70 1440 < th dose independent rect. 8 12
792 25.84 humidity 70 1440 < th dose independent no NA NA
861 25.84 humidity 70 1440 < th dose independent rect. 19 23
870 25.84 humidity 50 10 > th dose dependent rect. 6 8
882 25.85 temperature 15 10 > th dose independent rect. 6 21
884 25.85 humidity 70 270 > th dose dependent sin 23 NA
885 25.85 temperature 30 270 < th dose dependent rect. 1 2
910 25.86 humidity 80 1440 < th dose dependent no NA NA
923 25.86 humidity 80 1440 < th dose dependent rect. 6 22
971 25.87 humidity 80 1440 < th dose dependent rect. 6 20
981 25.87 humidity 80 1440 < th dose dependent rect. 1 23
987 25.87 humidity 80 1440 < th dose dependent rect. 20 23
988 25.88 radiation 40 270 < th dose independent rect. 4 10
999 25.88 humidity 50 10 > th dose dependent rect. 6 10