Os11g0163500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os11g0163500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.09 | 0.326 | 8.02 | 1.02 | 0.885 | -0.828 | 0.967 | -0.856 | 0.337 | 23.6 | 24.6 | 22 | -- | -- |
| 48.99 | 0.326 | 8.03 | 0.899 | 0.883 | -0.744 | 0.722 | -- | 0.305 | 23.6 | 25 | 9 | -- | -- |
| 51.15 | 0.336 | 8.03 | 0.885 | 0.874 | -0.75 | -- | -0.0987 | 0.314 | 23.5 | 24.6 | 22 | -- | -- |
| 51.17 | 0.335 | 8.03 | 0.871 | 0.872 | -0.741 | -- | -- | 0.311 | 23.5 | 24.6 | 22 | -- | -- |
| 77.18 | 0.409 | 7.99 | 1 | -- | -0.894 | -- | -1.31 | 0.381 | -- | 28.3 | 871 | -- | -- |
| 57.2 | 0.355 | 8 | 1.07 | 0.752 | -- | 0.698 | -- | 0.449 | 23.3 | -- | -- | -- | -- |
| 59.28 | 0.361 | 8 | 1.04 | 0.75 | -- | -- | -- | 0.447 | 23.2 | -- | -- | -- | -- |
| 78.69 | 0.413 | 8.03 | 0.839 | -- | -1.01 | -- | -- | 0.275 | -- | 30.22 | 849 | -- | -- |
| 69.36 | 0.388 | 8.07 | -- | 0.941 | -1.06 | -- | -- | 0.162 | 23.7 | 24.76 | 3 | -- | -- |
| 94.37 | 0.454 | 7.98 | 1.06 | -- | -- | -- | -- | 0.453 | -- | -- | -- | -- | -- |
| 88 | 0.439 | 8.03 | -- | 0.76 | -- | -- | -- | 0.331 | 23.3 | -- | -- | -- | -- |
| 93.4 | 0.45 | 8.05 | -- | -- | -1.31 | -- | -- | 0.168 | -- | 63.58 | 905 | -- | -- |
| 124.13 | 0.52 | 8.01 | -- | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.82 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 8 |
| 10 | 43.41 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 16 | 43.60 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 15 |
| 27 | 43.79 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 10 |
| 74 | 44.69 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 166 | 46.01 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 169 | 46.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 14 |
| 247 | 46.58 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 249 | 46.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 252 | 46.61 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 18 |
| 277 | 46.79 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 308 | 46.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 333 | 46.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 389 | 47.12 | temperature | 20 | 90 | > th | dose dependent | sin | 12 | NA |
| 394 | 47.14 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 396 | 47.14 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 397 | 47.14 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 414 | 47.19 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 418 | 47.20 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 8 |
| 421 | 47.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 426 | 47.22 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 12 |
| 429 | 47.23 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 438 | 47.25 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 444 | 47.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 446 | 47.27 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 465 | 47.31 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 491 | 47.37 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 492 | 47.37 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 8 |
| 507 | 47.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 533 | 47.45 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 541 | 47.48 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 551 | 47.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 592 | 47.56 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 2 |
| 619 | 47.60 | wind | 3 | 720 | < th | dose independent | rect. | 23 | 5 |
| 639 | 47.63 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 662 | 47.68 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 764 | 47.80 | wind | 5 | 4320 | > th | dose dependent | sin | 14 | NA |
| 827 | 47.87 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 13 |
| 893 | 47.98 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 22 |
| 895 | 47.99 | wind | 3 | 720 | > th | dose independent | rect. | 1 | 3 |
| 945 | 48.03 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 20 |
| 956 | 48.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 981 | 48.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 983 | 48.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 23 |