BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0163500 Os11g0163500|AK101154
(483 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21200.1 | chr1:7421483-7422814 FORWARD LENGTH=444 285 5e-77
AT1G76870.1 | chr1:28857250-28858407 FORWARD LENGTH=386 260 1e-69
AT3G10040.1 | chr3:3096580-3097875 REVERSE LENGTH=432 161 8e-40
>AT1G21200.1 | chr1:7421483-7422814 FORWARD LENGTH=444
Length = 443
Score = 285 bits (728), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 184/450 (40%), Positives = 257/450 (57%), Gaps = 31/450 (6%)
Query: 49 MEGSNPPGNMTQ--GPSYGSLDLHGISKQMHPPNSGNQGF--NQPQIPGNFTIPMDRVTE 104
M+G+ P G + + SYG DL G S ++H +S NQ N P + +P VT
Sbjct: 1 MDGNFPQGGVVRSGASSYGGFDLQG-SMRVHHQDSMNQQHRHNPNSRPLHEGLPFTMVT- 58
Query: 105 PDNISDGVQLGQHGKIAXXXXXXXXXSKNHGSDEEEHDMNEDAADG------KDKKGSPW 158
Q+ ++ KN SD++E E+ DG + KGSPW
Sbjct: 59 ----GQTCDHHQNQNMSMSEQQKAEREKNSVSDDDEPSFTEEGGDGVHNEANRSTKGSPW 114
Query: 159 HRMKWTDSMVKLLITAVSYTGEDPGADLGGGRRNYSMMQKKGKWKAISKVMGERGCHVSP 218
R+KWTD MVKLLITAVSY G+D D RR ++++QKKGKWK++SKVM ERG HVSP
Sbjct: 115 QRVKWTDKMVKLLITAVSYIGDDSSIDSSS-RRKFAVLQKKGKWKSVSKVMAERGYHVSP 173
Query: 219 QQCEDKFNDLNKRYKRLTDILGRGTACNVVENHSLLDHMD-ISEKMKEDARKILNSKHLF 277
QQCEDKFNDLNKRYK+L D+LGRGT+C VVEN +LLD + +++K K+D RKI++SKHLF
Sbjct: 174 QQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDSIGYLNDKEKDDVRKIMSSKHLF 233
Query: 278 YEEMCSYHNNNRISLPEDPALQQSLQLALRCKED---NDFMRHASGXXXXXXXXXXXXXX 334
YEEMCSYHN NR+ LP D ALQ+SLQLALR ++D +D +H
Sbjct: 234 YEEMCSYHNGNRLHLPHDLALQRSLQLALRSRDDHDNDDSRKHQMEDLDDEDHDGDGDEH 293
Query: 335 XXXXXXHRA-----VDTNIRGPSMHKRMWHVVDHGD---VGFVTSCS-NDGSGRSDPYDV 385
H A V+ G K++ + H D V S N S P+
Sbjct: 294 DEYEEQHYAYGDCRVNHYGGGGGPLKKIRPSLSHEDGDHPSHVNSLECNKVSLPQIPFSQ 353
Query: 386 LDINKPFPDGCDLALVQKD-LALKAAEIQKHRLQIETKAVQLAKQRLKWEMFRKNKDLEL 444
D+N+ + VQK + + ++++ +LQI+ + ++L KQR +W+ F K +D EL
Sbjct: 354 ADVNQGGAESGRAGSVQKQWMESRTLQLEEQKLQIQVELLELEKQRFRWQRFSKKRDQEL 413
Query: 445 EKLALENEQMMLQNKRFELDLRHKELELEI 474
E++ +ENE+M L+N R L+L+ +EL +E+
Sbjct: 414 ERMRMENERMKLENDRMGLELKQRELGVEL 443
>AT1G76870.1 | chr1:28857250-28858407 FORWARD LENGTH=386
Length = 385
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 144/330 (43%), Positives = 208/330 (63%), Gaps = 24/330 (7%)
Query: 147 AADG--KDKKGSPWHRMKWTDSMVKLLITAVSYTGEDPGADLGGGRRNYSMMQKKGKWKA 204
++DG K K+ SPW R+KW D MVKL+ITA+SY GED G+D + ++++QKKGKW++
Sbjct: 70 SSDGQNKSKENSPWQRVKWMDKMVKLMITALSYIGEDSGSD-----KKFAVLQKKGKWRS 124
Query: 205 ISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTACNVVENHSLLDHMD-ISEKM 263
+SKVM ERG HVSPQQCEDKFNDLNKRYK+L ++LGRGT+C VVEN SLLD +D ++EK
Sbjct: 125 VSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTSCEVVENPSLLDKIDYLNEKE 184
Query: 264 KEDARKILNSKHLFYEEMCSYHNNNRISLPEDPALQQSLQL-ALRCKEDNDFMRHASGXX 322
K++ R+I++SKHLFYEEMCSYHN NR+ LP DPA+Q+SL L L ++D+D H
Sbjct: 185 KDEVRRIMSSKHLFYEEMCSYHNGNRLHLPHDPAVQRSLHLITLGSRDDHDNDEHGKHQN 244
Query: 323 XXXXXXXXXXXXXXXXXXHRAVDTNIRGPSMHKRMWHVVDHGDVGFVTSCSNDGSGRSDP 382
R + +R H+ V H + G+ C P
Sbjct: 245 EDLDDDDDYEEDHDGALSDRPL-KRLRQSQSHED----VGHPNKGYDVPCL--------P 291
Query: 383 YDVLDINKPFPDGCDLA--LVQKDLALKAAEIQKHRLQIETKAVQLAKQRLKWEMFRKNK 440
D+N+ A L ++ + K+ E++ +LQI+ + ++L +Q+ KWE+F K +
Sbjct: 292 RSQADVNRGISLDSRKAAGLQRQQIESKSLELEGRKLQIQAEMMELERQQFKWEVFSKRR 351
Query: 441 DLELEKLALENEQMMLQNKRFELDLRHKEL 470
+ +L K+ +ENE+M L+N+R L+L+ EL
Sbjct: 352 EQKLAKMRMENERMKLENERMSLELKRIEL 381
>AT3G10040.1 | chr3:3096580-3097875 REVERSE LENGTH=432
Length = 431
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 91/157 (57%), Positives = 116/157 (73%), Gaps = 15/157 (9%)
Query: 145 EDAA--DGKDKKGSPWHRMKWTDSMVKLLITAVSYTGEDPGAD-----------LGGGRR 191
ED+A DGK +K S WHRMKWTD+MV+LLI AV Y G++ G + GGG
Sbjct: 87 EDSAGTDGK-RKLSQWHRMKWTDTMVRLLIMAVFYIGDEAGLNDPVDAKKKTGGGGGGGG 145
Query: 192 NYSMMQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTACNVVENH 251
M+QKKGKWK++S+ M E+G VSPQQCEDKFNDLNKRYKR+ DILG+G AC VVEN
Sbjct: 146 GGGMLQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGIACRVVENQ 205
Query: 252 SLLDHMD-ISEKMKEDARKILNSKHLFYEEMCSYHNN 287
LL+ MD ++ K+K++ +K+LNSKHLF+ EMC+YHN+
Sbjct: 206 GLLESMDHLTPKLKDEVKKLLNSKHLFFREMCAYHNS 242
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 408 KAAEIQKHRLQIETKAVQLAKQRLKWEMFRKNKDLELEKLALENEQMMLQNKRFELDLRH 467
K EI++ ++ E + V++ KQR+KW +R K+ E+EK L+N++ L+ +R L LR
Sbjct: 350 KMLEIEEKKIGYEWEGVEMEKQRVKWMRYRSKKEREMEKAKLDNQRRRLETERMILMLRR 409
Query: 468 KELEL-EIKIKGNANHP 483
E+EL E++ G P
Sbjct: 410 SEIELNELQSSGTRVDP 426
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,674,000
Number of extensions: 467292
Number of successful extensions: 1488
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1477
Number of HSP's successfully gapped: 5
Length of query: 483
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 381
Effective length of database: 8,310,137
Effective search space: 3166162197
Effective search space used: 3166162197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)