BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0155100 Os11g0155100|AK108413
         (318 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0155100  Cyclin-like F-box domain containing protein         399   e-111
Os12g0156500  Cyclin-like F-box domain containing protein         278   3e-75
Os02g0535901  Cyclin-like F-box domain containing protein         182   2e-46
Os04g0414500  Conserved hypothetical protein                      110   2e-24

>Os11g0155100 Cyclin-like F-box domain containing protein
          Length = 318

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/318 (69%), Positives = 221/318 (69%)

Query: 1   MDELRAPACGGGVGTVIEDLPTDVLALVLRRLDGASLAAVGCACSSFRELAVDQETWRGL 60
           MDELRAPACGGGVGTVIEDLPTDVLALVLRRLDGASLAAVGCACSSFRELAVDQETWRGL
Sbjct: 1   MDELRAPACGGGVGTVIEDLPTDVLALVLRRLDGASLAAVGCACSSFRELAVDQETWRGL 60

Query: 61  CLALWPSVRDVLXXXXXXXXXXYRXXXXXXXXXXXXXXXXXXXXXXXVPGSLPSRLVSAV 120
           CLALWPSVRDVL          YR                       VPGSLPSRLVSAV
Sbjct: 61  CLALWPSVRDVLGCGGGGGGDGYRAFFADAFPFPEAAAAVASAAPAPVPGSLPSRLVSAV 120

Query: 121 DLHHGGVCIMSRVVETDTSSAWFLGSPFRVDALVQEGFXXXXXXXXXXXXXXWILIDPAS 180
           DLHHGGVCIMSRVVETDTSSAWFLGSPFRVDALVQEGF              WILIDPAS
Sbjct: 121 DLHHGGVCIMSRVVETDTSSAWFLGSPFRVDALVQEGFSAPSPITPSSLTLSWILIDPAS 180

Query: 181 GRAMNASSRRPVAVDRKWLTGETVARFTVMLGGGVALDAAVTCDDRYGHVREVSLCVEDX 240
           GRAMNASSRRPVAVDRKWLTGETVARFTVMLGGGVALDAAVTCDDRYGHVREVSLCVED 
Sbjct: 181 GRAMNASSRRPVAVDRKWLTGETVARFTVMLGGGVALDAAVTCDDRYGHVREVSLCVEDG 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEEFVXXXXXXXXXXXXXXXIVDLCC 300
                                             YEEFV               IVDLCC
Sbjct: 241 EGGGVSGQDGLGAVAAAMAGARRGKGAEAAARQRYEEFVKGKRARKEWKARREGIVDLCC 300

Query: 301 SGVGAAAFVGFLVMLTFR 318
           SGVGAAAFVGFLVMLTFR
Sbjct: 301 SGVGAAAFVGFLVMLTFR 318



>Os12g0156500 Cyclin-like F-box domain containing protein
          Length = 327

 Score =  278 bits (712), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 170/310 (54%), Positives = 183/310 (59%), Gaps = 15/310 (4%)

Query: 17  IEDLPTDVLALVLRRLD-GASLAAVGCACSSFRELAVDQETWRGLCLALWPSVRDVLXX- 74
           IED+P DVL+LVLRRLD GASLAA+GCACS+FRELA D ETWRGLCLA WPS+RDV    
Sbjct: 25  IEDIPGDVLSLVLRRLDDGASLAALGCACSAFRELAADAETWRGLCLATWPSLRDVDGLD 84

Query: 75  --XXXXXXXXYRXXXXXXXXXXXXXXXXXXXXXXXVPGS---LPSRLVSAVDLHHGGVCI 129
                     YR                       VP S   LP+RLVSAVDLHHG VC+
Sbjct: 85  ECGGVTGGGGYRALFADAFPLPAEARGL-------VPSSASLLPARLVSAVDLHHGEVCL 137

Query: 130 MSRVVETDTSSAWFLGSPFRVDALVQEGFXXXXXXXXXXXXXXWILIDPASGRAMNASSR 189
           MSRVVETD SS WFLGSPFRVDALVQEGF              WILIDPA+GRA+NASSR
Sbjct: 138 MSRVVETDASSEWFLGSPFRVDALVQEGFSAPAPITPAELTLSWILIDPATGRAVNASSR 197

Query: 190 RPVAVDRKWLTGETVARFTVMLGGG-VALDAAVTCDDRYGHVREVSLCVEDXXXXXXXXX 248
           RPV+VDR+WL GETVARFTV+LGGG VALDAAVTCDDR+GHVREVSL  ED         
Sbjct: 198 RPVSVDREWLAGETVARFTVVLGGGVVALDAAVTCDDRHGHVREVSLRAEDGDGGGVSGR 257

Query: 249 XXXXXXXXXXXXXXXXXXXXXXXXXXYEEFVXXXXXXXXXXXXXXXIVDLCCSGVGAAAF 308
                                     YE F                 VD  CSGV AAAF
Sbjct: 258 GVLAAVAAAMEGARHGRGAEAAAWRRYEAFARGRAARKVKKARRDGAVDFFCSGVAAAAF 317

Query: 309 VGFLVMLTFR 318
           VG L  LT R
Sbjct: 318 VGVLSTLTLR 327



>Os02g0535901 Cyclin-like F-box domain containing protein
          Length = 316

 Score =  182 bits (463), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/317 (38%), Positives = 151/317 (47%), Gaps = 19/317 (5%)

Query: 15  TVIEDLPTDVLALVLRRLDGASLAAVGCACSSFRELAVDQETWRGLCLALWPSV-----R 69
           T +EDLP DVLA  LRRLDG SLAA GCA S  R LA D +TWR LCL+ WPS+     R
Sbjct: 6   TTVEDLPGDVLACALRRLDGPSLAAAGCATSGLRALADDPDTWRALCLSRWPSLAAAEQR 65

Query: 70  DVLXXXXXXXXXXYRXXXXXXXXXXXXXXXXXXXXXXXVPGSLPSRLVSAVDLHHGGVCI 129
            VL           R                           LP  LVSAVD++HGG  +
Sbjct: 66  CVLSAAGAVSP---RRLFADAFPFPCVDDAAAAAPLDGDDQRLPGELVSAVDVYHGGAAV 122

Query: 130 MSRVVETDTSSAWFLGSPFRVDALVQEGFXXXXXXXXXXXX-------XXWILIDPASGR 182
           +SRVVET TSS+WFL SPFRVDA+  EG                      WIL+DP++GR
Sbjct: 123 VSRVVETSTSSSWFLASPFRVDAV--EGKSPAPAPASVASSWSPAELELSWILLDPSTGR 180

Query: 183 AMNASSRRPVAVDRKWLTGETVARFTVMLGGGVALDAAVTCDDRYGHVREVSLCVEDXXX 242
           A+N SSRRPVAV+R W TG+T+ R+ V+L  G   +A V+C +  G + EVSL  +D   
Sbjct: 181 AVNVSSRRPVAVERHWYTGDTLVRYAVVL-AGCKFEATVSCSEEAGQITEVSLAADDADG 239

Query: 243 XXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXYEEFVXXXXXXXXXXXXXXXIVDLCCS 301
                                            Y+EFV               +VDLCCS
Sbjct: 240 AAISGEGCLRLLAAAMAGPRKGGRGQEGEAKRRYDEFVRRKRGRKESKARREVLVDLCCS 299

Query: 302 GVGAAAFVGFLVMLTFR 318
            V A A + FL  +  R
Sbjct: 300 AVSAVAVISFLAAVVLR 316



>Os04g0414500 Conserved hypothetical protein
          Length = 118

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 72/111 (64%), Gaps = 1/111 (0%)

Query: 129 IMSRVVETDTSSAWFLGSPFRVDALVQEGFXXXXXXXXXXXXXXWILIDPASGRAMNASS 188
           ++SRVVET  SS WFLGSPFRV+A+  +                W+++DPA GRA+N SS
Sbjct: 4   LLSRVVETPASSPWFLGSPFRVEAVECKKPAAEAALSPAELELSWVVVDPARGRAVNVSS 63

Query: 189 RRPVAVDRKWLTGETVARFTVMLGGGVALDAAVTCDDRYGHVREVSLCVED 239
           RR VAVDR W TGET+ RF V+L GG   +  VTC +  G++ EVSL V+D
Sbjct: 64  RRAVAVDRHWYTGETLVRFAVVL-GGCKFETTVTCSEGAGNISEVSLAVQD 113



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,784,489
Number of extensions: 243481
Number of successful extensions: 980
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 6
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)