Os04g0414500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0414500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.7 | 0.659 | 5.94 | -1.02 | 0.384 | 2.59 | -0.349 | -6.46 | -0.0846 | 12.7 | 26.9 | 4167 | -- | -- |
| 206.6 | 0.669 | 5.85 | 0.327 | 0.208 | 1.92 | -0.165 | -- | -0.201 | 11.1 | 23.08 | 4835 | -- | -- |
| 197.06 | 0.654 | 5.93 | -1.02 | 0.393 | 2.6 | -- | -6.44 | -0.0833 | 12.4 | 26.9 | 4151 | -- | -- |
| 206 | 0.668 | 5.85 | 0.348 | 0.267 | 1.94 | -- | -- | -0.228 | 12 | 23 | 4840 | -- | -- |
| 205.36 | 0.667 | 5.94 | -0.991 | -- | 2.47 | -- | -6.15 | -0.0854 | -- | 26.9 | 4271 | -- | -- |
| 336.61 | 0.86 | 5.68 | 1.35 | 0.13 | -- | -0.786 | -- | 0.509 | 15.2 | -- | -- | -- | -- |
| 337.3 | 0.86 | 5.68 | 1.33 | 0.189 | -- | -- | -- | 0.503 | 11.6 | -- | -- | -- | -- |
| 209.36 | 0.674 | 5.85 | 0.323 | -- | 1.95 | -- | -- | -0.239 | -- | 23 | 4546 | -- | -- |
| 207.93 | 0.672 | 5.87 | -- | 0.243 | 2.07 | -- | -- | -0.312 | 12.5 | 23 | 4543 | -- | -- |
| 339.55 | 0.861 | 5.69 | 1.33 | -- | -- | -- | -- | 0.501 | -- | -- | -- | -- | -- |
| 384.1 | 0.917 | 5.72 | -- | 0.175 | -- | -- | -- | 0.354 | 11.1 | -- | -- | -- | -- |
| 211.71 | 0.678 | 5.87 | -- | -- | 2.06 | -- | -- | -0.311 | -- | 23.02 | 4546 | -- | -- |
| 386.02 | 0.917 | 5.72 | -- | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 2 | 192.96 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 3 | 195.44 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 15 | 198.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 17 | 198.85 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 19 | 198.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 21 | 198.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 27 | 199.54 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 32 | 200.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 17 |
| 33 | 200.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 35 | 200.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 17 |
| 39 | 200.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 50 | 200.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 56 | 200.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 10 |
| 57 | 200.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 12 |
| 64 | 200.91 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 82 | 201.03 | temperature | 25 | 4320 | > th | dose dependent | sin | 21 | NA |
| 95 | 201.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 101 | 201.10 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 6 |
| 127 | 201.28 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 136 | 201.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 178 | 201.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 209 | 201.70 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 228 | 201.82 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 259 | 201.95 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 282 | 202.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 22 |
| 288 | 202.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 21 |
| 321 | 202.17 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 327 | 202.18 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 340 | 202.23 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 367 | 202.34 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 380 | 202.38 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 415 | 202.48 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 475 | 202.70 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 484 | 202.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 495 | 202.75 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 551 | 202.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 608 | 203.10 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 657 | 203.28 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 688 | 203.39 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 787 | 203.75 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 824 | 203.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 834 | 203.93 | temperature | 25 | 4320 | > th | dose independent | sin | 22 | NA |
| 870 | 204.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 872 | 204.11 | temperature | 25 | 4320 | < th | dose independent | sin | 21 | NA |
| 905 | 204.29 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 926 | 204.38 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 942 | 204.46 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |