BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0414500 Os04g0414500|AK121479
         (118 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0414500  Conserved hypothetical protein                      169   3e-43
Os02g0535901  Cyclin-like F-box domain containing protein         103   3e-23
Os11g0155100  Cyclin-like F-box domain containing protein          84   3e-17
Os12g0156500  Cyclin-like F-box domain containing protein          82   1e-16

>Os04g0414500 Conserved hypothetical protein
          Length = 118

 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/118 (73%), Positives = 87/118 (73%)

Query: 1   MAPLLSRVVETPASSPWFLGSPFRVEAVECKKXXXXXXXXXXXXXXXWVVVDPXXXXXXX 60
           MAPLLSRVVETPASSPWFLGSPFRVEAVECKK               WVVVDP       
Sbjct: 1   MAPLLSRVVETPASSPWFLGSPFRVEAVECKKPAAEAALSPAELELSWVVVDPARGRAVN 60

Query: 61  XXXXXXXXXDRHWYTGETLVRFAVVLGGCKFETTVTCSEGAGNISEVSLAVQDAVVLR 118
                    DRHWYTGETLVRFAVVLGGCKFETTVTCSEGAGNISEVSLAVQDAVVLR
Sbjct: 61  VSSRRAVAVDRHWYTGETLVRFAVVLGGCKFETTVTCSEGAGNISEVSLAVQDAVVLR 118



>Os02g0535901 Cyclin-like F-box domain containing protein
          Length = 316

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 66/113 (58%), Gaps = 5/113 (4%)

Query: 2   APLLSRVVETPASSPWFLGSPFRVEAVECKKXXXXXXXXXXX-----XXXXWVVVDPXXX 56
           A ++SRVVET  SS WFL SPFRV+AVE K                     W+++DP   
Sbjct: 120 AAVVSRVVETSTSSSWFLASPFRVDAVEGKSPAPAPASVASSWSPAELELSWILLDPSTG 179

Query: 57  XXXXXXXXXXXXXDRHWYTGETLVRFAVVLGGCKFETTVTCSEGAGNISEVSL 109
                        +RHWYTG+TLVR+AVVL GCKFE TV+CSE AG I+EVSL
Sbjct: 180 RAVNVSSRRPVAVERHWYTGDTLVRYAVVLAGCKFEATVSCSEEAGQITEVSL 232



>Os11g0155100 Cyclin-like F-box domain containing protein
          Length = 318

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 1/112 (0%)

Query: 4   LLSRVVETPASSPWFLGSPFRVEAVECKKXXXXXXXXXXXXXXXWVVVDPXXXXXXXXXX 63
           ++SRVVET  SS WFLGSPFRV+A+  +                W+++DP          
Sbjct: 129 IMSRVVETDTSSAWFLGSPFRVDALVQEGFSAPSPITPSSLTLSWILIDPASGRAMNASS 188

Query: 64  XXXXXXDRHWYTGETLVRFAVVL-GGCKFETTVTCSEGAGNISEVSLAVQDA 114
                 DR W TGET+ RF V+L GG   +  VTC +  G++ EVSL V+D 
Sbjct: 189 RRPVAVDRKWLTGETVARFTVMLGGGVALDAAVTCDDRYGHVREVSLCVEDG 240



>Os12g0156500 Cyclin-like F-box domain containing protein
          Length = 327

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 4   LLSRVVETPASSPWFLGSPFRVEAVECKKXXXXXXXXXXXXXXXWVVVDPXXXXXXXXXX 63
           L+SRVVET ASS WFLGSPFRV+A+  +                W+++DP          
Sbjct: 137 LMSRVVETDASSEWFLGSPFRVDALVQEGFSAPAPITPAELTLSWILIDPATGRAVNASS 196

Query: 64  XXXXXXDRHWYTGETLVRFAVVLGG--CKFETTVTCSEGAGNISEVSLAVQ 112
                 DR W  GET+ RF VVLGG     +  VTC +  G++ EVSL  +
Sbjct: 197 RRPVSVDREWLAGETVARFTVVLGGGVVALDAAVTCDDRHGHVREVSLRAE 247



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,800,991
Number of extensions: 67725
Number of successful extensions: 153
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 4
Length of query: 118
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 33
Effective length of database: 12,597,611
Effective search space: 415721163
Effective search space used: 415721163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)