BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0146800 Os11g0146800|AB079874
(344 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0146800 Similar to Disrupted meiotic cDNA 1 protein (F... 679 0.0
Os12g0143800 Similar to Disrupted meiotic cDNA 1 protein (F... 667 0.0
AK064759 354 7e-98
Os11g0615800 DNA repair protein RAD51 family protein 349 2e-96
Os12g0497300 Similar to DNA repair protein RAD51 homolog 341 6e-94
Os01g0578000 RecA bacterial DNA recombination family protein 115 6e-26
Os05g0121700 RecA bacterial DNA recombination family protein 84 2e-16
>Os11g0146800 Similar to Disrupted meiotic cDNA 1 protein (Fragment)
Length = 344
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/344 (96%), Positives = 333/344 (96%)
Query: 1 MAPSKQYDEGGQLQLMDAXXXXXXXXXXXSIDKLISQGINSGDVKKLQDAGIYTCNGLMM 60
MAPSKQYDEGGQLQLMDA SIDKLISQGINSGDVKKLQDAGIYTCNGLMM
Sbjct: 1 MAPSKQYDEGGQLQLMDAERIEEEEECFESIDKLISQGINSGDVKKLQDAGIYTCNGLMM 60
Query: 61 HTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFMTGSDLLIKRKSVVRITTGSQALDELLG 120
HTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFMTGSDLLIKRKSVVRITTGSQALDELLG
Sbjct: 61 HTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFMTGSDLLIKRKSVVRITTGSQALDELLG 120
Query: 121 GGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPI 180
GGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPI
Sbjct: 121 GGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPI 180
Query: 181 AERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSG 240
AERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSG
Sbjct: 181 AERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSG 240
Query: 241 RGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHA 300
RGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHA
Sbjct: 241 RGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHA 300
Query: 301 ATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDAKD 344
ATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDAKD
Sbjct: 301 ATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDAKD 344
>Os12g0143800 Similar to Disrupted meiotic cDNA 1 protein (Fragment)
Length = 344
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/344 (95%), Positives = 330/344 (95%)
Query: 1 MAPSKQYDEGGQLQLMDAXXXXXXXXXXXSIDKLISQGINSGDVKKLQDAGIYTCNGLMM 60
MAPSKQY EGGQLQLMDA SIDKLISQGINSGDVKKLQDAGIYTCNGLMM
Sbjct: 1 MAPSKQYSEGGQLQLMDAERIEEEEECFESIDKLISQGINSGDVKKLQDAGIYTCNGLMM 60
Query: 61 HTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFMTGSDLLIKRKSVVRITTGSQALDELLG 120
HTKKSLTGIKGLSEAKVDKICEAAEKLLSQGF+TGSDLLIKRKSVVRITTGSQALD+LLG
Sbjct: 61 HTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFITGSDLLIKRKSVVRITTGSQALDKLLG 120
Query: 121 GGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPI 180
GGIETLCITEAFGEFRSGKTQLAHTLCVS QLPIHMHGGNGKVAYIDTEGTFRPERIVPI
Sbjct: 121 GGIETLCITEAFGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPI 180
Query: 181 AERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSG 240
AERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSG
Sbjct: 181 AERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSG 240
Query: 241 RGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHA 300
RGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITD KKPAGGHVLAHA
Sbjct: 241 RGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHA 300
Query: 301 ATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDAKD 344
ATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDAKD
Sbjct: 301 ATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDAKD 344
>AK064759
Length = 339
Score = 354 bits (908), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 173/315 (54%), Positives = 224/315 (71%), Gaps = 1/315 (0%)
Query: 31 IDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQ 90
I +L GIN+ D+KKL++AG +T + KK L IKG+SEAK DKI A KL+
Sbjct: 25 ISRLEQCGINANDLKKLEEAGYHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPM 84
Query: 91 GFMTGSDLLIKRKSVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVST 150
GF T ++ +R +++ITTGS+ LD+LL GGIET ITE FGEFR+GKTQ+ HTL V+
Sbjct: 85 GFTTATEFHQQRSEMIQITTGSKELDKLLQGGIETGSITEIFGEFRTGKTQICHTLAVTC 144
Query: 151 QLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLL 210
QLPI GG GK YIDTEGTFRPER++ +AER+G+ + VLDN+ YAR + +HQ LL
Sbjct: 145 QLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLL 204
Query: 211 LGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVY 270
+A M E + LLIVDS AL+R D+SGRGEL+ RQ LA+ L L ++A+EF VAV
Sbjct: 205 YQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVV 264
Query: 271 ITNQVIAD-PGGGMFITDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGE 329
ITNQV+A G MF DPKKP GG+++AHA+T RL LRKG+GE R+CKI+D+P LPE E
Sbjct: 265 ITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAE 324
Query: 330 AVFQVTSGGIMDAKD 344
A+F + + G+ DAKD
Sbjct: 325 AMFAINADGVGDAKD 339
>Os11g0615800 DNA repair protein RAD51 family protein
Length = 339
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/315 (54%), Positives = 225/315 (71%), Gaps = 1/315 (0%)
Query: 31 IDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQ 90
I++L + GI + DVKKL+D+G+YT + +K L IKG+SEAKVDKI EAA KL+
Sbjct: 25 IEQLQASGIAALDVKKLKDSGLYTVESVAYTPRKDLLQIKGISEAKVDKIVEAASKLVPL 84
Query: 91 GFMTGSDLLIKRKSVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVST 150
GF + S L +R ++++TTGS+ LD++L GGIET ITE +GEFRSGKTQL HTLCV+
Sbjct: 85 GFTSASQLHAQRLEIIQVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTC 144
Query: 151 QLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLL 210
QLP+ GG GK YID EGTFRP+R++ IA+RFG++ VL+N+ YARAY +HQ LL
Sbjct: 145 QLPLDQGGGEGKALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL 204
Query: 211 LGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVY 270
L A+ M E F L+IVDS AL+R DFSGRGEL+ RQ +A+ L L K+A+EF VAV
Sbjct: 205 LEAASMMIETRFALMIVDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFGVAVV 264
Query: 271 ITNQVIADPGGGMFITDPK-KPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGE 329
ITNQV+A G P+ KP GG+++AHA+T RL LRKG+GE+R+CK+ +P L E E
Sbjct: 265 ITNQVVAQVDGSAMFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAE 324
Query: 330 AVFQVTSGGIMDAKD 344
A FQ+ S G+ D KD
Sbjct: 325 ARFQIASEGVADVKD 339
>Os12g0497300 Similar to DNA repair protein RAD51 homolog
Length = 341
Score = 341 bits (874), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 221/314 (70%)
Query: 31 IDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQ 90
I++L + GI + DVKKL+DAG+ T ++ +K L IKG+SEAKVDKI E A KL+
Sbjct: 28 IEQLQASGIAALDVKKLKDAGLCTVESVVYSPRKDLLQIKGISEAKVDKIIEGASKLVPL 87
Query: 91 GFMTGSDLLIKRKSVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVST 150
GF + S L +R ++++TTGS+ LD++L GGIET ITE +GEFRSGKTQL HTLCV+
Sbjct: 88 GFTSASQLHAQRLEIIQVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTC 147
Query: 151 QLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLL 210
QLP+ GG GK YID EGTFRP+R++ IA+RFG++ VL+N+ YARAY +HQ LL
Sbjct: 148 QLPLDQGGGEGKALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL 207
Query: 211 LGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVY 270
L A+ M E F ++IVDS AL+R DFSGRGEL+ RQ LA+ L L K+A+EF VAV
Sbjct: 208 LEAASMMVETRFAIMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 267
Query: 271 ITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGEA 330
ITNQV+A G KP GG+++AHA+T RL LRKG+ E+R+CK+ +P L E EA
Sbjct: 268 ITNQVVAQVDGAAMFGPQIKPIGGNIMAHASTTRLFLRKGRAEERICKVVSSPCLAEAEA 327
Query: 331 VFQVTSGGIMDAKD 344
FQ++ G+ D KD
Sbjct: 328 RFQISPEGVTDVKD 341
>Os01g0578000 RecA bacterial DNA recombination family protein
Length = 349
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 133/274 (48%), Gaps = 28/274 (10%)
Query: 90 QGFMTGSDLLIKRKSVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVS 149
+G D+L +S I TGS L+ +LGGGI +TE G GKTQL L ++
Sbjct: 72 KGVQNAWDMLSDEQSRRHINTGSADLNNILGGGIHCKEVTEIGGVPGVGKTQLGIQLAIN 131
Query: 150 TQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAE--------------------RFGMDAN 189
Q+P+ G GK YIDTEG+F ER+ IAE + +
Sbjct: 132 VQIPVEYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDILEYFPHCHDKAPAGQEKLKPE 191
Query: 190 AVLDNIIYARAYTYEHQYNLLLGLAAKMAE-EPFRLLIVDSVIALFRVDFSGRGELAERQ 248
+ L +I Y R +Y Q ++ L + E + R++I+DSV FR DF ++A R
Sbjct: 192 SFLADIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFD---DMALRT 248
Query: 249 QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 308
+ L+ + +L K+++ +N+AV + NQV G F A G +H+ T RL+L
Sbjct: 249 RVLSGLSLKLMKLSKAYNLAVVLLNQVTTKFTEGSF---QLTLALGDSWSHSCTNRLILY 305
Query: 309 KGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDA 342
G +R + +P+LP A + VT G+ DA
Sbjct: 306 -WNGNERYGFLDKSPSLPVASAPYAVTVKGVRDA 338
>Os05g0121700 RecA bacterial DNA recombination family protein
Length = 363
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 109/262 (41%), Gaps = 26/262 (9%)
Query: 107 RITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYI 166
R+ T + LDE L GGI +TE G GKTQ L + LP G NG+V YI
Sbjct: 81 RLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYI 140
Query: 167 DTEGTFRPERIVPIAER-----FGMD--ANAVLDNIIYARAYTYEHQYNLLLGLAAKMAE 219
DTE F R++ I E+ F + A + I+ R + L + + +
Sbjct: 141 DTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLLQ 200
Query: 220 EPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIA-- 277
+LL+VDS+ AL + + RQ L LS L IAE + V +TNQV +
Sbjct: 201 HDVKLLVVDSMAALMSSEIE-KSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVRSQS 259
Query: 278 -DPGGGMFITDPKK--------------PAGGHVLAHAATIRLMLRKGKGEQRVCKIFDA 322
D G KK A G AHA TIRL+ G R K+ +
Sbjct: 260 NDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTIRLVFEAHSG-HRYIKVAKS 318
Query: 323 PNLPEGEAVFQVTSGGIMDAKD 344
P P F V S GI+ D
Sbjct: 319 PMTPAVAFPFTVESSGIILLSD 340
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,242,177
Number of extensions: 469942
Number of successful extensions: 782
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 8
Length of query: 344
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 242
Effective length of database: 11,709,973
Effective search space: 2833813466
Effective search space used: 2833813466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)