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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0121700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RecA bacterial DNA recombination family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.31 (0.0334) R2 : 0.393
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.36 (0.0796) R2dC : 0.389 R2C : 0.386
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.141 (0.0701) R2dN8 : 0.00692 R2N8 : 0.00451
σ : 0.629
deviance : 180.56
__
_____
C
peak time of C : 23.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.56 0.565 4.22 1.12 1.15 -1.22 1.78 1.78 0.451 22.5 15.31 9 -- --
146.76 0.569 4.25 0.863 1.14 -1.25 1.42 -- 0.386 22.3 15 55 -- --
154.8 0.584 4.25 0.833 1.13 -1.32 -- 0.083 0.396 22.2 14.9 163 -- --
154.74 0.583 4.25 0.821 1.13 -1.3 -- -- 0.393 22.1 15.23 112 -- --
224.6 0.702 4.19 1.01 -- -1.89 -- 0.336 0.504 -- 16.49 17 -- --
162.59 0.598 4.29 0.622 1.36 -- 1.51 -- 0.208 23.2 -- -- -- --
172.26 0.615 4.29 0.561 1.35 -- -- -- 0.203 23.1 -- -- -- --
224.71 0.701 4.2 0.956 -- -1.88 -- -- 0.49 -- 16.49 17 -- --
170.87 0.612 4.28 -- 1.19 -0.924 -- -- 0.255 22.5 15.2 76 -- --
286.6 0.791 4.26 0.593 -- -- -- -- 0.215 -- -- -- -- --
180.56 0.629 4.31 -- 1.36 -- -- -- 0.141 23.1 -- -- -- --
247.35 0.735 4.23 -- -- -1.53 -- -- 0.351 -- 18 7 -- --
295.88 0.803 4.28 -- -- -- -- -- 0.149 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.34 humidity 80 43200 < th dose independent rect. 24 1
6 141.58 humidity 80 43200 < th dose dependent rect. 22 2
8 141.70 humidity 80 43200 > th dose independent rect. 24 1
15 141.78 humidity 80 43200 < th dose independent rect. 23 6
34 142.13 humidity 80 43200 < th dose independent rect. 4 1
35 142.16 humidity 80 43200 > th dose independent rect. 23 6
51 142.37 humidity 80 43200 > th dose independent rect. 4 1
56 142.39 humidity 80 43200 < th dose dependent rect. 22 8
64 142.49 humidity 90 14400 > th dose dependent rect. 18 8
70 142.55 humidity 90 14400 > th dose dependent rect. 19 6
97 142.74 wind 1 43200 > th dose dependent rect. 6 1
121 142.95 humidity 90 14400 > th dose dependent rect. 22 1
132 143.06 humidity 90 14400 > th dose dependent sin 15 NA
136 143.11 wind 9 43200 < th dose dependent rect. 6 1
143 143.21 humidity 90 14400 < th dose independent rect. 17 8
178 143.51 wind 3 43200 > th dose independent rect. 6 1
180 143.52 humidity 80 43200 < th dose dependent rect. 5 1
189 143.59 humidity 90 14400 > th dose independent rect. 17 10
191 143.59 humidity 90 14400 > th dose dependent rect. 16 19
210 143.66 humidity 90 14400 < th dose independent rect. 7 20
213 143.67 humidity 90 14400 > th dose dependent rect. 9 19
220 143.69 humidity 90 14400 > th dose dependent rect. 4 22
235 143.72 humidity 90 14400 < th dose independent rect. 8 18
281 143.81 humidity 90 14400 < th dose independent sin 16 NA
285 143.82 radiation 1 14400 > th dose independent rect. 18 11
289 143.82 humidity 90 14400 > th dose dependent rect. 1 22
296 143.84 wind 3 43200 < th dose independent rect. 6 1
332 143.90 temperature 30 10 < th dose dependent rect. 5 23
335 143.91 humidity 90 14400 > th dose dependent no NA NA
342 143.92 humidity 90 14400 < th dose independent rect. 17 18
346 143.92 humidity 90 14400 > th dose dependent rect. 9 23
383 143.99 wind 9 43200 > th dose independent rect. 20 18
391 144.00 humidity 90 14400 > th dose independent rect. 9 18
404 144.03 radiation 40 14400 < th dose dependent rect. 18 11
413 144.05 wind 9 43200 < th dose independent rect. 2 12
426 144.08 humidity 90 14400 > th dose independent sin 15 NA
471 144.16 wind 9 43200 < th dose independent rect. 20 18
482 144.18 humidity 90 14400 > th dose independent rect. 17 18
498 144.20 wind 9 43200 > th dose independent rect. 2 12
509 144.23 wind 3 43200 > th dose independent rect. 4 3
527 144.26 humidity 90 14400 < th dose independent rect. 24 23
531 144.27 wind 9 43200 > th dose independent rect. 24 14
557 144.31 wind 9 43200 < th dose independent rect. 7 7
567 144.34 wind 3 43200 < th dose independent rect. 4 3
578 144.36 wind 3 43200 > th dose independent rect. 3 12
586 144.37 radiation 10 14400 < th dose dependent rect. 18 2
598 144.40 wind 9 43200 > th dose independent rect. 8 6
636 144.44 temperature 30 10 < th dose dependent rect. 9 23
652 144.46 wind 3 43200 < th dose dependent rect. 8 2
676 144.49 wind 3 43200 < th dose independent rect. 2 8
698 144.51 wind 3 43200 < th dose dependent rect. 6 4
703 144.52 wind 3 43200 < th dose independent rect. 2 12
723 144.54 humidity 90 14400 > th dose independent rect. 24 23
726 144.54 humidity 70 14400 < th dose dependent rect. 18 14
727 144.55 humidity 90 14400 < th dose independent no NA NA
729 144.55 wind 3 43200 > th dose independent rect. 2 8
768 144.60 wind 3 43200 > th dose independent sin 4 NA
788 144.62 wind 3 43200 > th dose independent rect. 4 6
848 144.68 temperature 15 10 > th dose dependent no NA NA
857 144.71 humidity 90 14400 > th dose independent no NA NA
874 144.73 humidity 90 14400 < th dose independent rect. 18 1
890 144.74 temperature 30 10 < th dose dependent rect. 1 23
897 144.76 wind 3 43200 < th dose independent sin 5 NA
914 144.77 humidity 90 14400 < th dose independent rect. 20 23
964 144.83 radiation 1 14400 > th dose independent rect. 18 1
1000 144.86 wind 7 43200 > th dose dependent rect. 6 8