BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0121700 Os05g0121700|AK107571
(363 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0121700 RecA bacterial DNA recombination family protein 744 0.0
Os01g0578000 RecA bacterial DNA recombination family protein 97 1e-20
AK064759 89 4e-18
Os12g0143800 Similar to Disrupted meiotic cDNA 1 protein (F... 84 2e-16
Os11g0146800 Similar to Disrupted meiotic cDNA 1 protein (F... 84 2e-16
Os11g0615800 DNA repair protein RAD51 family protein 81 1e-15
Os12g0497300 Similar to DNA repair protein RAD51 homolog 80 2e-15
>Os05g0121700 RecA bacterial DNA recombination family protein
Length = 363
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MANKLVSEMRLPPHLAHILAARRLTTAKDVLSLPEVELMGVLDAGIHTARAAVAHVSEIA 60
MANKLVSEMRLPPHLAHILAARRLTTAKDVLSLPEVELMGVLDAGIHTARAAVAHVSEIA
Sbjct: 1 MANKLVSEMRLPPHLAHILAARRLTTAKDVLSLPEVELMGVLDAGIHTARAAVAHVSEIA 60
Query: 61 CPPYQTALALLEAFRARGDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKL 120
CPPYQTALALLEAFRARGDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKL
Sbjct: 61 CPPYQTALALLEAFRARGDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKL 120
Query: 121 ALLATLPECYGGLNGRVLYIDTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLR 180
ALLATLPECYGGLNGRVLYIDTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLR
Sbjct: 121 ALLATLPECYGGLNGRVLYIDTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLR 180
Query: 181 PTSLSEFTKSLEQMKVTLLQHDVKLLVVDSMAALMSSEIEKSATGLRQHPLRWALSFLKS 240
PTSLSEFTKSLEQMKVTLLQHDVKLLVVDSMAALMSSEIEKSATGLRQHPLRWALSFLKS
Sbjct: 181 PTSLSEFTKSLEQMKVTLLQHDVKLLVVDSMAALMSSEIEKSATGLRQHPLRWALSFLKS 240
Query: 241 IAEFSQIPVVVTNQVRSQSNDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTI 300
IAEFSQIPVVVTNQVRSQSNDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTI
Sbjct: 241 IAEFSQIPVVVTNQVRSQSNDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTI 300
Query: 301 RLVFEAHSGHRYIKVAKSPMTPAVAFPFTVESSGIILLSDEGIDVPSPEITSIRCQGENV 360
RLVFEAHSGHRYIKVAKSPMTPAVAFPFTVESSGIILLSDEGIDVPSPEITSIRCQGENV
Sbjct: 301 RLVFEAHSGHRYIKVAKSPMTPAVAFPFTVESSGIILLSDEGIDVPSPEITSIRCQGENV 360
Query: 361 LAQ 363
LAQ
Sbjct: 361 LAQ 363
>Os01g0578000 RecA bacterial DNA recombination family protein
Length = 349
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 36/261 (13%)
Query: 89 LDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYIDTESKFSS 148
L+ L GGI ++TE+ G G+GKTQ ++LA+ +P YGGL G+ +YIDTE F
Sbjct: 97 LNNILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYIDTEGSFMV 156
Query: 149 RRMIEIGEKSFPQIFR------------QEGLA-QKMAGRILVLRPTSLSEFTKSLEQMK 195
R+ +I E I QE L + I R S +E + ++
Sbjct: 157 ERVYQIAEGCISDILEYFPHCHDKAPAGQEKLKPESFLADIYYFRICSYTEQIAVINYLE 216
Query: 196 VTLLQH-DVKLLVVDSMAALMSSEIEKSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQ 254
L +H DV+++++DS+ + + A LR L L +++ + VV+ NQ
Sbjct: 217 KFLGEHKDVRIVIIDSVTFHFRQDFDDMA--LRTRVLSGLSLKLMKLSKAYNLAVVLLNQ 274
Query: 255 VRSQSNDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTIRLVFEAHSGHRYIK 314
V ++ + ++ L ALG W+H+ T RL+ + RY
Sbjct: 275 VTTKFTEGSFQ--------------------LTLALGDSWSHSCTNRLILYWNGNERYGF 314
Query: 315 VAKSPMTPAVAFPFTVESSGI 335
+ KSP P + P+ V G+
Sbjct: 315 LDKSPSLPVASAPYAVTVKGV 335
>AK064759
Length = 339
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 112/258 (43%), Gaps = 27/258 (10%)
Query: 81 RLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYI 140
++ T + LD+ L GGI G +TE+ G GKTQ C LA+ LP GG G+ +YI
Sbjct: 101 QITTGSKELDKLLQGGIETGSITEIFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYI 160
Query: 141 DTESKFSSRRMIEIGEKSFPQIFRQEGLA-QKMAGRILVLRPTSLSEFTKSLEQMKVTLL 199
DTE F R++ + E+ GL+ + + R + T+ L Q ++
Sbjct: 161 DTEGTFRPERLLAVAERY--------GLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMV 212
Query: 200 QHDVKLLVVDSMAALMSSEIE-KSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVRSQ 258
+ LL+VDS AL ++ + RQ L L L +A+ + VV+TNQV +Q
Sbjct: 213 ESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 272
Query: 259 SNDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTIRLVFEAHSGH-RYIKVAK 317
D ++ + +K N AHA T RL G R K+
Sbjct: 273 V-DGAAMFAADPKKPIGGN---------------IIAHASTTRLYLRKGRGETRICKIYD 316
Query: 318 SPMTPAVAFPFTVESSGI 335
SP P F + + G+
Sbjct: 317 SPCLPEAEAMFAINADGV 334
>Os12g0143800 Similar to Disrupted meiotic cDNA 1 protein (Fragment)
Length = 344
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 112/262 (42%), Gaps = 26/262 (9%)
Query: 81 RLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYI 140
R+ T + LD+ L GGI +TE G GKTQ L + A LP G NG+V YI
Sbjct: 107 RITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYI 166
Query: 141 DTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLLQ 200
DTE F R++ I E+ F + A + I+ R + L + + +
Sbjct: 167 DTEGTFRPERIVPIAER-----FGMD--ANAVLDNIIYARAYTYEHQYNLLLGLAAKMAE 219
Query: 201 HDVKLLVVDSMAALMSSEIE-KSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVRSQS 259
+LL+VDS+ AL + + RQ L LS L IAE + V +TNQV +
Sbjct: 220 EPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADP 279
Query: 260 NDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTIRLVFEAHSG-HRYIKVAKS 318
G + +++K A G AHA TIRL+ G R K+ +
Sbjct: 280 G--GGMFITDLKK---------------PAGGHVLAHAATIRLMLRKGKGEQRVCKIFDA 322
Query: 319 PMTPAVAFPFTVESSGIILLSD 340
P P F V S GI+ D
Sbjct: 323 PNLPEGEAVFQVTSGGIMDAKD 344
>Os11g0146800 Similar to Disrupted meiotic cDNA 1 protein (Fragment)
Length = 344
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 109/262 (41%), Gaps = 26/262 (9%)
Query: 81 RLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYI 140
R+ T + LDE L GGI +TE G GKTQ L + LP G NG+V YI
Sbjct: 107 RITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYI 166
Query: 141 DTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLLQ 200
DTE F R++ I E+ F + A + I+ R + L + + +
Sbjct: 167 DTEGTFRPERIVPIAER-----FGMD--ANAVLDNIIYARAYTYEHQYNLLLGLAAKMAE 219
Query: 201 HDVKLLVVDSMAALMSSEIE-KSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVRSQS 259
+LL+VDS+ AL + + RQ L LS L IAE + V +TNQV +
Sbjct: 220 EPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIA-- 277
Query: 260 NDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTIRLVFEAHSG-HRYIKVAKS 318
D G KK A G AHA TIRL+ G R K+ +
Sbjct: 278 -DPGGGMFITDPKK--------------PAGGHVLAHAATIRLMLRKGKGEQRVCKIFDA 322
Query: 319 PMTPAVAFPFTVESSGIILLSD 340
P P F V S GI+ D
Sbjct: 323 PNLPEGEAVFQVTSGGIMDAKD 344
>Os11g0615800 DNA repair protein RAD51 family protein
Length = 339
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 111/263 (42%), Gaps = 27/263 (10%)
Query: 81 RLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYI 140
++ T R LD+ L GGI G +TE+ G GKTQ C L + LP GG G+ LYI
Sbjct: 101 QVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYI 160
Query: 141 DTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLLQ 200
D E F +R+++I ++ F G + + R + ++ L + +++
Sbjct: 161 DAEGTFRPQRLLQIADR-----FGLNG--ADVLENVAYARAYNTDHQSRLLLEAASMMIE 213
Query: 201 HDVKLLVVDSMAALMSSEIE-KSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVRSQS 259
L++VDS AL ++ + RQ + L L+ +A+ + VV+TNQV +Q
Sbjct: 214 TRFALMIVDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFGVAVVITNQVVAQV 273
Query: 260 NDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQ-WAHAVTIRLVFEAHSG-HRYIKVAK 317
+ F + +G AHA T RL G R KV
Sbjct: 274 DGSAM-----------------FAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVIS 316
Query: 318 SPMTPAVAFPFTVESSGIILLSD 340
SP F + S G+ + D
Sbjct: 317 SPCLAEAEARFQIASEGVADVKD 339
>Os12g0497300 Similar to DNA repair protein RAD51 homolog
Length = 341
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 111/262 (42%), Gaps = 26/262 (9%)
Query: 81 RLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYI 140
++ T R LD+ L GGI G +TE+ G GKTQ C L + LP GG G+ LYI
Sbjct: 104 QVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYI 163
Query: 141 DTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLLQ 200
D E F +R+++I ++ F G + + R + ++ L + +++
Sbjct: 164 DAEGTFRPQRLLQIADR-----FGLNG--ADVLENVAYARAYNTDHQSRLLLEAASMMVE 216
Query: 201 HDVKLLVVDSMAALMSSEIE-KSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVRSQS 259
+++VDS AL ++ + RQ L L L+ +A+ + VV+TNQV +Q
Sbjct: 217 TRFAIMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ- 275
Query: 260 NDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTIRLVF-EAHSGHRYIKVAKS 318
+ A F + G AHA T RL + + R KV S
Sbjct: 276 ----------------VDGAAMFGPQIKPIGGNIMAHASTTRLFLRKGRAEERICKVVSS 319
Query: 319 PMTPAVAFPFTVESSGIILLSD 340
P F + G+ + D
Sbjct: 320 PCLAEAEARFQISPEGVTDVKD 341
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,570,436
Number of extensions: 459431
Number of successful extensions: 1333
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1324
Number of HSP's successfully gapped: 8
Length of query: 363
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 261
Effective length of database: 11,709,973
Effective search space: 3056302953
Effective search space used: 3056302953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)