Os12g0497300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA repair protein RAD51 homolog.
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Os12g0497300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA repair protein RAD51 homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.56 | 0.593 | 3.47 | -0.518 | 0.386 | -0.0296 | -0.834 | 2.08 | -0.0909 | 6.11 | 19.73 | 1383 | -- | -- |
| 163.76 | 0.596 | 3.54 | -0.542 | 0.417 | -0.519 | -0.419 | -- | -0.24 | 6.04 | 16.05 | 4481 | -- | -- |
| 161.26 | 0.591 | 3.47 | -0.535 | 0.384 | -0.0268 | -- | 2.02 | -0.0897 | 6.2 | 19.7 | 1382 | -- | -- |
| 161.29 | 0.592 | 3.51 | -0.591 | 0.353 | -0.84 | -- | -- | -0.145 | 5.46 | 16.1 | 4814 | -- | -- |
| 168.8 | 0.605 | 3.47 | -0.53 | -- | -0.00929 | -- | 2.03 | -0.0795 | -- | 19.78 | 1382 | -- | -- |
| 169.38 | 0.61 | 3.54 | -0.962 | 0.374 | -- | -0.668 | -- | -0.222 | 6.26 | -- | -- | -- | -- |
| 170.48 | 0.611 | 3.54 | -0.97 | 0.371 | -- | -- | -- | -0.22 | 6.23 | -- | -- | -- | -- |
| 167.99 | 0.604 | 3.52 | -0.555 | -- | -1 | -- | -- | -0.102 | -- | 16.2 | 6186 | -- | -- |
| 165.28 | 0.599 | 3.48 | -- | 0.388 | -0.958 | -- | -- | 0.0285 | 5.54 | 16.7 | 14928 | -- | -- |
| 177.62 | 0.623 | 3.54 | -0.959 | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
| 195.26 | 0.654 | 3.51 | -- | 0.358 | -- | -- | -- | -0.112 | 6.37 | -- | -- | -- | -- |
| 170.76 | 0.609 | 3.49 | -- | -- | -1.15 | -- | -- | 0.0192 | -- | 16.01 | 13596 | -- | -- |
| 201.9 | 0.663 | 3.52 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.83 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 156.00 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 3 | 156.00 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 5 | 156.05 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 7 | 156.07 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 9 | 156.09 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 13 | 156.10 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 19 | 156.12 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 26 | 156.18 | wind | 7 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 43 | 156.25 | wind | 7 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 44 | 156.25 | humidity | 70 | 43200 | > th | dose dependent | sin | 11 | NA |
| 52 | 156.30 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 58 | 156.32 | wind | 7 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 66 | 156.35 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 82 | 156.47 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 106 | 156.60 | wind | 3 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 110 | 156.61 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 131 | 156.68 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 132 | 156.68 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 148 | 156.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 18 |
| 159 | 156.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 14 |
| 179 | 156.81 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 188 | 156.83 | humidity | 80 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 200 | 156.85 | humidity | 50 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 240 | 156.91 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 270 | 156.96 | humidity | 70 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 281 | 156.98 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 294 | 157.02 | wind | 9 | 43200 | > th | dose dependent | sin | 10 | NA |
| 302 | 157.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 308 | 157.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 311 | 157.06 | temperature | 15 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 312 | 157.06 | temperature | 15 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 340 | 157.10 | temperature | 15 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 353 | 157.11 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 11 |
| 373 | 157.14 | humidity | 80 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 374 | 157.14 | wind | 7 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 401 | 157.19 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 406 | 157.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 13 |
| 410 | 157.20 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 430 | 157.22 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 434 | 157.23 | humidity | 80 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 441 | 157.24 | wind | 9 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 442 | 157.24 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 446 | 157.24 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 456 | 157.25 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 465 | 157.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 473 | 157.27 | humidity | 50 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 498 | 157.28 | wind | 7 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 514 | 157.29 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 555 | 157.32 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 568 | 157.33 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 602 | 157.35 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 14 |
| 605 | 157.35 | wind | 7 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 609 | 157.36 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 626 | 157.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 16 |
| 627 | 157.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 629 | 157.36 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 650 | 157.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 668 | 157.37 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 17 |
| 669 | 157.38 | wind | 7 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 671 | 157.38 | temperature | 15 | 14400 | < th | dose dependent | sin | 10 | NA |
| 696 | 157.40 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 715 | 157.41 | wind | 5 | 14400 | > th | dose independent | rect. | 22 | 12 |
| 762 | 157.43 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 770 | 157.43 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 7 | 9 |
| 784 | 157.44 | wind | 5 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 786 | 157.44 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 16 |
| 787 | 157.44 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 790 | 157.44 | temperature | 15 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 809 | 157.45 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 21 |
| 834 | 157.46 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 848 | 157.47 | humidity | 90 | 14400 | < th | dose independent | sin | 21 | NA |
| 886 | 157.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 2 |