BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0121700 Os05g0121700|AK107571
(363 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28560.1 | chr2:12237052-12239086 REVERSE LENGTH=372 409 e-115
AT5G57450.1 | chr5:23274008-23274922 REVERSE LENGTH=305 95 5e-20
AT2G45280.2 | chr2:18670103-18672041 FORWARD LENGTH=388 94 8e-20
AT1G07745.1 | chr1:2400797-2402842 REVERSE LENGTH=323 90 2e-18
AT5G20850.1 | chr5:7070758-7072860 REVERSE LENGTH=343 82 3e-16
AT3G22880.1 | chr3:8097948-8100740 REVERSE LENGTH=345 79 5e-15
>AT2G28560.1 | chr2:12237052-12239086 REVERSE LENGTH=372
Length = 371
Score = 409 bits (1052), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/360 (57%), Positives = 271/360 (75%), Gaps = 5/360 (1%)
Query: 1 MANKLVSEMRLPPHLAHILAARRLTTAKDVLSLPEVELMGVLDAGIHTARAAVAHVSEIA 60
MANKL+ EM L +++I AAR + TAKD LS+ E ELM +LD G+ R+A++ +SE
Sbjct: 1 MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60
Query: 61 CPPYQTALALLE--AFRARGDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCL 118
PP Q+A +LLE G L T L+GLD+ L GGIP G LTE+VGP GIGK+QFC+
Sbjct: 61 SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120
Query: 119 KLALLATLPECYGGLNGRVLYIDTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILV 178
KLAL A+ P YGGL+GRV+YID ESKFSSRR+IE+G +SFP++F +G+AQ+MAGRILV
Sbjct: 121 KLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILV 180
Query: 179 LRPTSLSEFTKSLEQMKVTLLQHDVKLLVVDSMAALMSSEIEKSATGLRQHPLRWALSFL 238
LRPTSL+ FT+S++++K ++LQ+ VKLLV+DSM AL+S E + A RQ L W +SFL
Sbjct: 181 LRPTSLANFTESIQELKNSILQNQVKLLVIDSMTALLSGENKPGAQ--RQPQLGWHISFL 238
Query: 239 KSIAEFSQIPVVVTNQVRSQSNDDGYRYSFEVEKKYD-SNNAEGFESHLVAALGIQWAHA 297
KS+AEFS+IP+VVTNQVRSQ+ D+ +YSF+ + K + +N + ++SHLVAALGI WAHA
Sbjct: 239 KSLAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKDEFKDNTKTYDSHLVAALGINWAHA 298
Query: 298 VTIRLVFEAHSGHRYIKVAKSPMTPAVAFPFTVESSGIILLSDEGIDVPSPEITSIRCQG 357
VTIRLV EA SG R IKVAKSPM+P +AFPF + S+GI LLSD G ++ P I +I +G
Sbjct: 299 VTIRLVLEAKSGQRIIKVAKSPMSPPLAFPFHITSAGISLLSDNGTELKGPGINTIHARG 358
>AT5G57450.1 | chr5:23274008-23274922 REVERSE LENGTH=305
Length = 304
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 131/298 (43%), Gaps = 49/298 (16%)
Query: 75 RARGDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLN 134
R+ + +L T LD L GGI LTE+V SG GKTQ CL+L+L LP +GGLN
Sbjct: 14 RSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLN 73
Query: 135 GRVLYIDTESKFSSRRMIEIG---EKSFPQIFRQEGLAQKMAGRILVLRPTSLSEFTKSL 191
G LY+ +E F RR+ ++ +S P I+ + V S+ +
Sbjct: 74 GSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIY--ANYNDNPCDHVFVQNVHSVDHLFDIM 131
Query: 192 EQMK----VTLLQHDVKLLVVDSMAALMSSEIEKSATGLRQHPLRWALSF-----LKSIA 242
++ + + +KL+V+DS+AAL SE + + + L++ R +L F LK +A
Sbjct: 132 PRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKK---RSSLFFKISGKLKQLA 188
Query: 243 EFSQIPVVVTNQVRS--QSND--DGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAV 298
+ +V+TNQV +++D G R + Y S +V +LG+ WA+ V
Sbjct: 189 SKFDLAIVITNQVTDLVETSDGLSGLRIG-NLRYLYSSGR------RVVPSLGLAWANCV 241
Query: 299 TIRLVFE---------------------AHSGHRYIKVAKSPMTPAVAFPFTVESSGI 335
R + S R + + SP P + F + GI
Sbjct: 242 NSRFFISRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGI 299
>AT2G45280.2 | chr2:18670103-18672041 FORWARD LENGTH=388
Length = 387
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 123/269 (45%), Gaps = 36/269 (13%)
Query: 81 RLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYI 140
R+ T+ LD L GGI +TE+ G GIGKTQ ++L++ +P GGL G+ +YI
Sbjct: 128 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 187
Query: 141 DTESKFSSRRMIEIGEKSFPQIFRQEGLAQK-MAGRILVLRPTSLSE----FTKSLEQMK 195
DTE F R ++I E + G K + ++P + E F +
Sbjct: 188 DTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQ 247
Query: 196 VTLLQH---------DVKLLVVDSMAALMSSEIEKSATGLRQHPLRWALSFLKSIAEFSQ 246
+ L+ H DVK+++VDS+ + + A R AL F+K +FS
Sbjct: 248 IALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLAQRTRVLS-EMALKFMKLAKKFS- 305
Query: 247 IPVVVTNQVRSQSNDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTIRLVFEA 306
+ VV+ NQV ++ ++ ++ L ALG W+H+ T R++
Sbjct: 306 LAVVLLNQVTTKFSEGSFQ--------------------LALALGDSWSHSCTNRVILYW 345
Query: 307 HSGHRYIKVAKSPMTPAVAFPFTVESSGI 335
+ RY + KSP P+ + +TV S G+
Sbjct: 346 NGDERYAYIDKSPSLPSASASYTVTSRGL 374
>AT1G07745.1 | chr1:2400797-2402842 REVERSE LENGTH=323
Length = 322
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 20/205 (9%)
Query: 58 EIACPPYQTALALLEAFRARGDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFC 117
E C P L LLE R L+T + D L GG G+LTE+VGPS GKTQFC
Sbjct: 66 ERQCRPLVNGLKLLEDLH-RNKHTLSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFC 124
Query: 118 LKLALLATLPECYGGLNGRVLYIDTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRIL 177
++ A A++ E + GRVLY+DT + FS+RR+ + F L QK+ RIL
Sbjct: 125 MQAA--ASVAENH---LGRVLYLDTGNSFSARRIAQ-----FICSSSDATLGQKVMSRIL 174
Query: 178 VLRPTSLSEFTKSLEQMKVTL-LQHDV-----KLLVVDSMAALMSSEIEKSATGLRQHPL 231
+ +L+ +++TL LQ +V +LLVVDS+++L++ + +G + L
Sbjct: 175 CHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPIL--GGSGSQGRAL 232
Query: 232 RWALSF-LKSIAEFSQIPVVVTNQV 255
A+ + LK +A I ++VTN
Sbjct: 233 MVAIGYLLKKLAHEHSIAILVTNHT 257
>AT5G20850.1 | chr5:7070758-7072860 REVERSE LENGTH=343
Length = 342
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 25/256 (9%)
Query: 87 RGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYIDTESKF 146
R LD+ L GGI G +TE+ G GKTQ C L + LP GG G+ +YID E F
Sbjct: 110 RELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTF 169
Query: 147 SSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLLQHDVKLL 206
+R+++I ++ F G + + R + ++ L + +++ LL
Sbjct: 170 RPQRLLQIADR-----FGLNGA--DVLENVAYARAYNTDHQSRLLLEAASMMIETRFALL 222
Query: 207 VVDSMAALMSSEIE-KSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVRSQSNDDGYR 265
+VDS AL ++ + RQ L L L+ +A+ + VV+TNQV +Q DG
Sbjct: 223 IVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV--DGSA 280
Query: 266 YSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTIRLVF-EAHSGHRYIKVAKSPMTPAV 324
+ K N AHA T RL + + R KV SP P
Sbjct: 281 LFAGPQFKPIGGNI--------------MAHATTTRLALRKGRAEERICKVISSPCLPEA 326
Query: 325 AFPFTVESSGIILLSD 340
F + + G+ D
Sbjct: 327 EARFQISTEGVTDCKD 342
>AT3G22880.1 | chr3:8097948-8100740 REVERSE LENGTH=345
Length = 344
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 106/257 (41%), Gaps = 26/257 (10%)
Query: 81 RLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYI 140
++ T + LD+ L GGI +TE G GKTQ L + LP G NG+V YI
Sbjct: 107 KITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYI 166
Query: 141 DTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLLQ 200
DTE F R++ I E+ F + A + I+ R + L + + +
Sbjct: 167 DTEGTFRPDRIVPIAER-----FGMDPGA--VLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
Query: 201 HDVKLLVVDSMAALMSSEIE-KSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVRSQS 259
++L+VDS+ AL + + RQ L LS L IAE + V +TNQV +
Sbjct: 220 EPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIA-- 277
Query: 260 NDDGYRYSFEVEKKYDSNNAEGFESHLVAALGIQWAHAVTIRLVFEAHSGH-RYIKVAKS 318
D G KK A G AHA TIRL+F G R KV +
Sbjct: 278 -DPGGGMFISDPKK--------------PAGGHVLAHAATIRLLFRKGKGDTRVCKVYDA 322
Query: 319 PMTPAVAFPFTVESSGI 335
P F + GI
Sbjct: 323 PNLAEAEASFQITQGGI 339
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,163,298
Number of extensions: 278310
Number of successful extensions: 884
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 874
Number of HSP's successfully gapped: 7
Length of query: 363
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,364,969
Effective search space: 2199986847
Effective search space used: 2199986847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)