BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0130100 Os11g0130100|AK063914
(431 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0130100 Conserved hypothetical protein 594 e-170
Os12g0126800 Regulation of nuclear pre-mRNA protein domain ... 551 e-157
Os04g0636700 Regulation of nuclear pre-mRNA protein domain ... 129 3e-30
Os01g0925000 Regulation of nuclear pre-mRNA protein domain ... 85 9e-17
>Os11g0130100 Conserved hypothetical protein
Length = 431
Score = 594 bits (1531), Expect = e-170, Method: Compositional matrix adjust.
Identities = 302/351 (86%), Positives = 302/351 (86%)
Query: 19 KAVRKDSGTVTKKLTIGGMPEKIVTAYQSVLDQHFDEDTALNKCNNAVSVLERMDKDVDD 78
KAVRKDSGTVTKKLTIGGMPEKIVTAYQSVLDQHFDEDTALNKCNNAVSVLERMDKDVDD
Sbjct: 19 KAVRKDSGTVTKKLTIGGMPEKIVTAYQSVLDQHFDEDTALNKCNNAVSVLERMDKDVDD 78
Query: 79 ACTQGIQQGSSLISDLQGQETVLKQCIEQLESVNMARITLINKLREALSEQEAKSELLRN 138
ACTQGIQQGSSLISDLQGQETVLKQCIEQLESVNMARITLINKLREALSEQEAKSELLRN
Sbjct: 79 ACTQGIQQGSSLISDLQGQETVLKQCIEQLESVNMARITLINKLREALSEQEAKSELLRN 138
Query: 139 QLHVARAKAEHAMQLKQRXXXXXXXXXXXXXXPLMVTLPPGQTAAMMQNSAAMPIFPHYQ 198
QLHVARAKAEHAMQLKQR PLMVTLPPGQTAAMMQNSAAMPIFPHYQ
Sbjct: 139 QLHVARAKAEHAMQLKQRLGSALNNGAGSSSSPLMVTLPPGQTAAMMQNSAAMPIFPHYQ 198
Query: 199 PLHPATSLPATSSAVGDEPKKTAAAMADKLASLSAPEKVLSSIFSSLAAEQARNSGSTSG 258
PLHPATSLPATSSAVGDEPKKTAAAMADKLASLSAPEKVLSSIFSSLAAEQARNSGSTSG
Sbjct: 199 PLHPATSLPATSSAVGDEPKKTAAAMADKLASLSAPEKVLSSIFSSLAAEQARNSGSTSG 258
Query: 259 DLSAGPPGFESNKKPRLDNPIHVSDMGAXXXXXXXXXXXXXIGATAALGGTQPPTQANQA 318
DLSAGPPGFESNKKPRLDNPIHVSDMGA IGATAALGGTQPPTQANQA
Sbjct: 259 DLSAGPPGFESNKKPRLDNPIHVSDMGAPPFFGQVPQVQPQIGATAALGGTQPPTQANQA 318
Query: 319 TGSFXXXXXXXXXXXQFVQNTXXXXXXXXXXXVSGSAPPPPLLPNIMSAGF 369
TGSF QFVQNT VSGSAPPPPLLPNIMSAGF
Sbjct: 319 TGSFPPPPPPLPLMPQFVQNTGGMFGMGPFGMVSGSAPPPPLLPNIMSAGF 369
>Os12g0126800 Regulation of nuclear pre-mRNA protein domain containing protein
Length = 585
Score = 551 bits (1421), Expect = e-157, Method: Compositional matrix adjust.
Identities = 289/351 (82%), Positives = 294/351 (83%)
Query: 19 KAVRKDSGTVTKKLTIGGMPEKIVTAYQSVLDQHFDEDTALNKCNNAVSVLERMDKDVDD 78
KA RKDSGTVT+KLT+GGMPEKIVTAYQSVLDQHFDEDTALNKCNNAVSVL+RMDKDVDD
Sbjct: 173 KAARKDSGTVTRKLTVGGMPEKIVTAYQSVLDQHFDEDTALNKCNNAVSVLDRMDKDVDD 232
Query: 79 ACTQGIQQGSSLISDLQGQETVLKQCIEQLESVNMARITLINKLREALSEQEAKSELLRN 138
ACTQGIQQGSSLISDLQGQETVLKQCIEQLESVNMARITLINKLR+AL EQEAKSELLRN
Sbjct: 233 ACTQGIQQGSSLISDLQGQETVLKQCIEQLESVNMARITLINKLRKALGEQEAKSELLRN 292
Query: 139 QLHVARAKAEHAMQLKQRXXXXXXXXXXXXXXPLMVTLPPGQTAAMMQNSAAMPIFPHYQ 198
QL VARAKAEHAMQLKQR PLMVTLPPGQTAAMMQNSAAMPIFP +Q
Sbjct: 293 QLLVARAKAEHAMQLKQRLGSALNNGAGSSSSPLMVTLPPGQTAAMMQNSAAMPIFPQFQ 352
Query: 199 PLHPATSLPATSSAVGDEPKKTAAAMADKLASLSAPEKVLSSIFSSLAAEQARNSGSTSG 258
PLHPATSLPATSSAVGDEPKKTAAAMADKLASLSAPEKVLSSIFSSLAAEQARNSGSTSG
Sbjct: 353 PLHPATSLPATSSAVGDEPKKTAAAMADKLASLSAPEKVLSSIFSSLAAEQARNSGSTSG 412
Query: 259 DLSAGPPGFESNKKPRLDNPIHVSDMGAXXXXXXXXXXXXXIGATAALGGTQPPTQANQA 318
DLSAGPPGFESNKKPRLDNPIH SDM A IGATAALGGTQPPTQANQA
Sbjct: 413 DLSAGPPGFESNKKPRLDNPIHASDMSAPPFFGQLPQVQPQIGATAALGGTQPPTQANQA 472
Query: 319 TGSFXXXXXXXXXXXQFVQNTXXXXXXXXXXXVSGSAPPPPLLPNIMSAGF 369
GSF QFVQNT VSGSAPPPP LPNIMSAGF
Sbjct: 473 AGSFPPPPPPLPLMPQFVQNTGGMFGMGPFGMVSGSAPPPPPLPNIMSAGF 523
>Os04g0636700 Regulation of nuclear pre-mRNA protein domain containing protein
Length = 528
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 131/242 (54%), Gaps = 31/242 (12%)
Query: 19 KAVRKDSGTVTKKLTIGGMPEKIVTAYQSVLDQHFDEDTALNKCNNAVSVLERMDKDVDD 78
K V++DS +V +L +GG EKIV+A +VL + DED+ L KC ++ + +M KDV
Sbjct: 152 KIVKRDSRSVKLRLGVGGTAEKIVSALHTVLSEQADEDSDLEKCKTSMRRVGKMQKDVSS 211
Query: 79 ACTQGIQ-QGSSLISDLQGQETVLKQCIEQLESVNMARITLINKLREALSEQEAKSELLR 137
AC++G + +L ++L+ +E + +CIE+L+ V R T++++L+EAL EQE++ E +R
Sbjct: 212 ACSKGDDPRRETLCTELKEEEDSMTECIEKLKVVEANRATVVSELKEALQEQESELEKVR 271
Query: 138 NQLHVARAKAEHAMQLKQRXXXXXXXXXXXXXXPLMVTLPPGQTAAMMQNSAAMPIFPHY 197
QL +A A E A ++++ ++N +P H
Sbjct: 272 TQLQLAEAMVEEAADMQRK----------------------------LKNEPVIPSSKHL 303
Query: 198 QPLHPATSLPATSSAVGDEPKKTAAAMADKLASLSAPEKVLSSIFSSLAAEQARNSGSTS 257
+ P P ++ D+ K AA +ADK+A+ S +++L S S AAE+A+NS T
Sbjct: 304 SSVEPGK--PLSNGQAKDQQKTAAAILADKIAASSNSQQILQSALSKFAAEEAKNSSETH 361
Query: 258 GD 259
D
Sbjct: 362 QD 363
>Os01g0925000 Regulation of nuclear pre-mRNA protein domain containing protein
Length = 490
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 72/122 (59%)
Query: 35 GGMPEKIVTAYQSVLDQHFDEDTALNKCNNAVSVLERMDKDVDDACTQGIQQGSSLISDL 94
G + EK+++ Y+ +L+ H D+DT + KC NA+S ++ + + ++ GS + +L
Sbjct: 145 GELLEKVISCYKHMLNAHVDDDTLMRKCQNALSFVDNLSNEYENNSILDCSNGSGFVEEL 204
Query: 95 QGQETVLKQCIEQLESVNMARITLINKLREALSEQEAKSELLRNQLHVARAKAEHAMQLK 154
Q Q +L+ IEQ ++ + R LI+ L+EAL EQE K E R+Q+ +++ + A L
Sbjct: 205 QEQHNILRDSIEQFKTSELLRGNLISCLKEALHEQEFKMERARSQIKEVQSRYKKADDLC 264
Query: 155 QR 156
Q+
Sbjct: 265 QK 266
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.125 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,154,273
Number of extensions: 347488
Number of successful extensions: 1387
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1386
Number of HSP's successfully gapped: 4
Length of query: 431
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 327
Effective length of database: 11,605,545
Effective search space: 3795013215
Effective search space used: 3795013215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)