Os12g0126800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Regulation of nuclear pre-mRNA protein domain containing protein.
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Os12g0126800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Regulation of nuclear pre-mRNA protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.62 | 0.427 | 7.32 | 1.57 | 0.936 | 1.29 | 0.113 | -0.347 | 0.176 | 16.9 | 33 | 1087 | -- | -- |
| 82.72 | 0.424 | 7.33 | 1.51 | 0.927 | 1.27 | 0.0579 | -- | 0.161 | 16.8 | 32.8 | 1126 | -- | -- |
| 82.65 | 0.423 | 7.32 | 1.57 | 0.939 | 1.28 | -- | -0.331 | 0.174 | 16.9 | 33 | 1086 | -- | -- |
| 82.73 | 0.424 | 7.33 | 1.5 | 0.926 | 1.27 | -- | -- | 0.161 | 16.8 | 32.79 | 1126 | -- | -- |
| 126.57 | 0.524 | 7.31 | 1.57 | -- | 1.48 | -- | -0.174 | 0.174 | -- | 36.57 | 1194 | -- | -- |
| 107.76 | 0.487 | 7.38 | 1.13 | 1.01 | -- | -0.0321 | -- | -0.0716 | 16.2 | -- | -- | -- | -- |
| 107.77 | 0.486 | 7.38 | 1.12 | 1.01 | -- | -- | -- | -0.0717 | 16.2 | -- | -- | -- | -- |
| 126.51 | 0.524 | 7.31 | 1.54 | -- | 1.48 | -- | -- | 0.175 | -- | 33.03 | 1200 | -- | -- |
| 134.31 | 0.54 | 7.39 | -- | 0.947 | 0.622 | -- | -- | -0.111 | 16.5 | 51.84 | 1085 | -- | -- |
| 163.4 | 0.597 | 7.37 | 1.08 | -- | -- | -- | -- | -0.0987 | -- | -- | -- | -- | -- |
| 141.11 | 0.556 | 7.41 | -- | 0.992 | -- | -- | -- | -0.197 | 16.2 | -- | -- | -- | -- |
| 180.69 | 0.626 | 7.37 | -- | -- | 0.844 | -- | -- | -0.0977 | -- | 59.99 | 1175 | -- | -- |
| 194.4 | 0.651 | 7.4 | -- | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 11 | 80.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 26 | 81.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 39 | 82.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 20 |
| 62 | 82.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 67 | 82.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 15 |
| 86 | 82.61 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 94 | 82.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 103 | 82.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 112 | 82.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 119 | 82.80 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 149 | 82.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 158 | 82.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 174 | 82.99 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 222 | 83.07 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 243 | 83.10 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 251 | 83.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 252 | 83.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 258 | 83.14 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 327 | 83.26 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 364 | 83.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 426 | 83.44 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 483 | 83.53 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 521 | 83.60 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 537 | 83.62 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 549 | 83.64 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 552 | 83.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 566 | 83.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 657 | 83.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 661 | 83.81 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 663 | 83.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 675 | 83.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 730 | 83.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 770 | 83.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 13 |
| 828 | 84.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 894 | 84.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |