Os01g0925000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Regulation of nuclear pre-mRNA protein domain containing protein.
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Os01g0925000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Regulation of nuclear pre-mRNA protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.42 | 0.217 | 9.25 | 1.39 | 0.342 | 0.0634 | -0.63 | -1.65 | 0.195 | 12.7 | 24.65 | 256 | -- | -- |
| 23.33 | 0.225 | 9.27 | 1.15 | 0.347 | 0.687 | -0.437 | -- | 0.141 | 12.5 | 18.84 | 278 | -- | -- |
| 22.05 | 0.219 | 9.24 | 1.44 | 0.332 | 0.0157 | -- | -1.8 | 0.206 | 12.7 | 27.25 | 837 | -- | -- |
| 23.91 | 0.228 | 9.28 | 1.17 | 0.349 | 0.756 | -- | -- | 0.132 | 12.6 | 18.7 | 316 | -- | -- |
| 28.16 | 0.247 | 9.24 | 1.47 | -- | 0.245 | -- | -1.79 | 0.241 | -- | 28.95 | 868 | -- | -- |
| 25.62 | 0.237 | 9.29 | 1.08 | 0.334 | -- | -0.369 | -- | 0.102 | 12.4 | -- | -- | -- | -- |
| 26.19 | 0.24 | 9.29 | 1.06 | 0.336 | -- | -- | -- | 0.101 | 12.6 | -- | -- | -- | -- |
| 30.02 | 0.255 | 9.28 | 1.24 | -- | 0.725 | -- | -- | 0.146 | -- | 15.37 | 7978 | -- | -- |
| 55.99 | 0.35 | 9.31 | -- | 0.319 | -0.0744 | -- | -- | -0.0191 | 12.5 | 18.7 | 316 | -- | -- |
| 33.27 | 0.27 | 9.29 | 1.05 | -- | -- | -- | -- | 0.0952 | -- | -- | -- | -- | -- |
| 56.02 | 0.35 | 9.31 | -- | 0.32 | -- | -- | -- | -0.0175 | 12.5 | -- | -- | -- | -- |
| 40.46 | 0.296 | 9.37 | -- | -- | -0.754 | -- | -- | -0.247 | -- | 45.6 | 47520 | -- | -- |
| 62.45 | 0.369 | 9.32 | -- | -- | -- | -- | -- | -0.0215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.64 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 3 | 20.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 4 | 20.89 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 22 |
| 7 | 20.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 14 | 21.08 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 19 | 21.15 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 20 |
| 24 | 21.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 27 | 21.20 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 34 | 21.24 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 48 | 21.30 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 52 | 21.32 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 59 | 21.36 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 75 | 21.41 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 83 | 21.45 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 98 | 21.49 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 99 | 21.50 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 100 | 21.50 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 110 | 21.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 129 | 21.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 135 | 21.57 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 137 | 21.58 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 158 | 21.61 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 160 | 21.61 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 163 | 21.61 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 167 | 21.62 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 168 | 21.62 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 175 | 21.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 189 | 21.64 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 235 | 21.69 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 252 | 21.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 275 | 21.74 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 294 | 21.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 298 | 21.78 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 21 |
| 311 | 21.80 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 322 | 21.81 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 364 | 21.86 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 20 |
| 402 | 21.89 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 419 | 21.90 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 9 | 11 |
| 431 | 21.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 450 | 21.92 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 472 | 21.93 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 481 | 21.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 485 | 21.94 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 622 | 22.01 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 639 | 22.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 651 | 22.02 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 10 |
| 652 | 22.02 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 22 |
| 653 | 22.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 665 | 22.02 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 669 | 22.03 | humidity | 90 | 14400 | > th | dose independent | sin | 8 | NA |
| 676 | 22.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 693 | 22.03 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 722 | 22.05 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 726 | 22.05 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 777 | 22.07 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 22 |
| 782 | 22.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 866 | 22.10 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 874 | 22.11 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 14 |
| 940 | 22.13 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 947 | 22.13 | radiation | 10 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 973 | 22.14 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 11 | 20 |
| 975 | 22.14 | temperature | 20 | 4320 | < th | dose dependent | sin | 14 | NA |
| 999 | 22.14 | temperature | 20 | 4320 | < th | dose dependent | rect. | 7 | 21 |