BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0925000 Os01g0925000|AK103764
(490 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G26990.1 | chr3:9948426-9951557 REVERSE LENGTH=514 256 3e-68
AT5G65180.1 | chr5:26045625-26047806 FORWARD LENGTH=440 214 6e-56
AT5G10060.1 | chr5:3145994-3148049 REVERSE LENGTH=470 189 3e-48
>AT3G26990.1 | chr3:9948426-9951557 REVERSE LENGTH=514
Length = 513
Score = 256 bits (653), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 194/328 (59%), Gaps = 17/328 (5%)
Query: 1 MNAGFSPQILAQKLLKLNNSRQSIETLSHWCVFHYRHCRQVVETWESDFHSAPRERRVSL 60
M + F+ QIL +KL KLNNS+ SIETLSHWC+FH + VVETW FH APRE+R++
Sbjct: 1 MGSSFNAQILVEKLAKLNNSQASIETLSHWCIFHMNKAKHVVETWGRQFHCAPREQRLAY 60
Query: 61 LYLANDIVQNSKKDSGRYVNEFWRVIPAALNDVFVNGDDFGRNVVQRLVDIWEERNIFGS 120
LYLANDI+QNS++ +V EFW+V+P AL D+ NGDDFGR +RLV+IWEER +FGS
Sbjct: 61 LYLANDILQNSRRKGSEFVGEFWKVLPDALRDMIENGDDFGRKSARRLVNIWEERKVFGS 120
Query: 121 HGQSLKEDYSRRFKEFKSKS------------RNSSGELLEKVISCYKHMLNAHVDDDTL 168
GQ LKE+ R E +++ R +G LEKV+S + + +D+D L
Sbjct: 121 RGQILKEELLGRQPENGTRNGNLVPLKLSVPQRQVNGSTLEKVVSAVEVLHGVQIDEDAL 180
Query: 169 MRKCQNALSFVDNLSNEYENNSILDCSNGSGFVEELQEQHNILRDSIEQFKTSELLRGNL 228
+ K NA +++ + E E + + G V+ELQ QH ILRD IEQ E R +L
Sbjct: 181 VGKSTNAAGYLEKATQEVERDLSSGHAPGPAVVKELQGQHVILRDCIEQLGAMETSRTSL 240
Query: 229 ISCLKEALHEQEFKMERARSQIKEVQSRYKKADDLCQKLGIHVERQEQPNHGPKNSGSEM 288
IS L+EAL EQE K+E+ R+ ++ + + + DLC++L H + P + S +
Sbjct: 241 ISHLREALQEQELKLEQVRNHLQIARFQSDRTGDLCRQLLDHGGSSQPPATEEEESKEVI 300
Query: 289 HGS---FGPDSANASSFEKGQSSAVMYS 313
S P S S E QS+ VM++
Sbjct: 301 KVSSTAAAPQSFTHSDVE--QSAPVMFA 326
>AT5G65180.1 | chr5:26045625-26047806 FORWARD LENGTH=440
Length = 439
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 178/292 (60%), Gaps = 29/292 (9%)
Query: 1 MNAGFSPQILAQKLLKLNNSRQSIETLSHWCVFHYRHCRQVVETWESDFHSAPRERRVSL 60
M++ FS +IL L KLN+++QSI+TLS WC+ H VV TWE FHS ++V L
Sbjct: 1 MSSPFSEEILIDNLAKLNSTQQSIQTLSQWCIVHRSEAELVVTTWEKQFHSTQIGQKVPL 60
Query: 61 LYLANDIVQNSKKDSGRYVNEFWRVIPAALNDVFVNGDDFGRNVVQRLVDIWEERNIFGS 120
LYLANDI+QNSK+ +V EFW+V+P AL D+ GDD+G+ VV RLV+IWEER +FGS
Sbjct: 61 LYLANDILQNSKRQGNEFVQEFWKVLPGALKDIVSLGDDYGKGVVSRLVNIWEERRVFGS 120
Query: 121 HGQSLKE-----------DYS-RRFKEFKSKSRN--------SSGELLEKVISCYKHMLN 160
+SLK+ D S +RF+ KS R+ SSG + EK++S + +
Sbjct: 121 RSKSLKDVMLSEEAPPPLDVSKKRFRGSKSAKRDSKSTKTKLSSGGVSEKIVSAFNLVRA 180
Query: 161 AHVDDDTLMRKCQNALSFVDNLSNEYENNSILDCSNGS-----GFVEELQEQHNILRDSI 215
+ +++T M KC++A+ + + + E+ CS +EL+E+ NILR S+
Sbjct: 181 ENSNEETEMNKCKSAVRRIRKMEKDVED----ACSTAKDPRKESLAKELEEEENILRQSV 236
Query: 216 EQFKTSELLRGNLISCLKEALHEQEFKMERARSQIKEVQSRYKKADDLCQKL 267
E+ K+ E R +L++ L+EAL EQE ++E +SQI+ Q + ++A ++ ++L
Sbjct: 237 EKLKSVEESRTSLVNHLREALREQESELENLQSQIQVAQEQTEEAQNMQKRL 288
>AT5G10060.1 | chr5:3145994-3148049 REVERSE LENGTH=470
Length = 469
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 170/290 (58%), Gaps = 23/290 (7%)
Query: 1 MNAGFSPQILAQKLLKLNNSRQSIETLSHWCVFHYRHCRQVVETWESDFHSAPRERRVSL 60
M++ FS QIL KL KLN+S+QSIETLSHWC+F+ +V TWE FHS +++V L
Sbjct: 1 MSSVFSDQILIDKLAKLNSSQQSIETLSHWCIFNRSKAELIVTTWEKQFHSTEMDQKVPL 60
Query: 61 LYLANDIVQNSKKDSGRYVNEFWRVIPAALNDVFVNGDDFGRNVVQRLVDIWEERNIFGS 120
LYLANDI+QNSK+ +V EFW V+P AL D+ GDD G++ V R++ IWEER +FGS
Sbjct: 61 LYLANDILQNSKRQGNEFVQEFWNVLPKALKDIVSQGDDNGKSAVARVIKIWEERRVFGS 120
Query: 121 HGQSLK-----EDYSRRFKEFKSKSRN----------------SSGELLEKVISCYKHML 159
+SLK ED K + R SSG + EK+ S Y ++
Sbjct: 121 RSKSLKDVMLGEDVPLPLDISKKRPRGSKSSKRESKSSRTKLASSGGVAEKIASAYHLVV 180
Query: 160 NAHVDDDTLMRKCQNALSFVDNLSNEYEN--NSILDCSNGSGFVEELQEQHNILRDSIEQ 217
+ +++ M KC++A+ + + + E ++ D +EL+E+ +LR IE+
Sbjct: 181 AENSNEEAEMNKCKSAVKRIRKMEKDVEEACSTAKDNPKRKSLAKELEEEEYLLRQCIEK 240
Query: 218 FKTSELLRGNLISCLKEALHEQEFKMERARSQIKEVQSRYKKADDLCQKL 267
K+ + R +L++ LK+AL EQE +++ ++QI+ + + ++A ++ ++L
Sbjct: 241 LKSVQGSRSSLVNQLKDALREQESELDNLKAQIQVAKEQTEEAQNMQKRL 290
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,200,192
Number of extensions: 384709
Number of successful extensions: 1541
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1536
Number of HSP's successfully gapped: 3
Length of query: 490
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 387
Effective length of database: 8,282,721
Effective search space: 3205413027
Effective search space used: 3205413027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)