Os11g0130100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0130100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.38 | 0.442 | 7.22 | 2.49 | 1.53 | -2.04 | -0.264 | 1.63 | 0.722 | 16.4 | 11.85 | 581 | -- | -- |
| 90.67 | 0.443 | 7.25 | 2.28 | 1.54 | -1.92 | -0.2 | -- | 0.658 | 16.2 | 14.8 | 572 | -- | -- |
| 88.46 | 0.438 | 7.22 | 2.48 | 1.58 | -2.08 | -- | 1.57 | 0.722 | 16.3 | 14.03 | 540 | -- | -- |
| 90.17 | 0.442 | 7.25 | 2.2 | 1.64 | -2.06 | -- | -- | 0.648 | 16.2 | 14.1 | 479 | -- | -- |
| 148.67 | 0.568 | 7.19 | 2.56 | -- | -2.1 | -- | 1.23 | 0.744 | -- | 7.012 | 1129 | -- | -- |
| 137.77 | 0.55 | 7.3 | 1.74 | 1.22 | -- | -0.443 | -- | 0.345 | 15.2 | -- | -- | -- | -- |
| 138.41 | 0.551 | 7.31 | 1.73 | 1.22 | -- | -- | -- | 0.342 | 15.2 | -- | -- | -- | -- |
| 149.93 | 0.57 | 7.23 | 2.3 | -- | -2.08 | -- | -- | 0.677 | -- | 9.082 | 1141 | -- | -- |
| 203.66 | 0.665 | 7.33 | -- | 1.42 | -1.06 | -- | -- | 0.278 | 15.7 | 6.969 | 409 | -- | -- |
| 222.96 | 0.698 | 7.31 | 1.68 | -- | -- | -- | -- | 0.31 | -- | -- | -- | -- | -- |
| 217.42 | 0.69 | 7.35 | -- | 1.19 | -- | -- | -- | 0.15 | 15.2 | -- | -- | -- | -- |
| 272.22 | 0.768 | 7.31 | -- | -- | -1.01 | -- | -- | 0.289 | -- | 16.9 | 1121 | -- | -- |
| 297.37 | 0.805 | 7.35 | -- | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 8 | 86.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 21 | 86.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 28 | 87.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 33 | 87.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 41 | 88.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 61 | 88.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 62 | 88.97 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 65 | 89.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 69 | 89.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 79 | 89.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 83 | 89.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 87 | 89.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 98 | 89.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 122 | 89.81 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 135 | 89.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 151 | 90.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 161 | 90.15 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 185 | 90.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 196 | 90.44 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 243 | 90.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 270 | 91.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 273 | 91.17 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 276 | 91.18 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 293 | 91.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 297 | 91.35 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 298 | 91.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 304 | 91.38 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 341 | 91.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 343 | 91.53 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 346 | 91.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 422 | 91.70 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 447 | 91.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 467 | 91.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 506 | 91.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 625 | 92.16 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 654 | 92.22 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 673 | 92.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 695 | 92.27 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 913 | 92.52 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 927 | 92.54 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 3 |